Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02263 ATGGTTTCTTTGCATATTAGTCTTCGTACTCAAACTTTTGTTTTCTGTTATGCAATAGGAACCATTTGCATCTTCCAAATAATCTATCTTGCGAACTCACTATCATTTGATTACCCCTACTTTAAGAATGGCGATGTCAATTGGGAAGGAGATGCTTCTCCTTATAAAGGTGCTATTCAAATCACTTCCAACACCCTTGATCAAAACAACAATTACAGTGTCGGGCGAGTCACGAGTTTTAAACAGATGCATCTCTGGGATTTGAAGTCTGGAAACCTTTCTGACTTCACCACCAATTTTTCCTTTGTTGTTTTTTCAAACACACAAAATTATGGAGATGGAATGGTATTCTTCATGGCTGATCCAAATCTTCCAGTTTTGAAGAATATCAAAGAAGGTGGCGGTCTTGGCCTTGTGGATGCAGACCAAGTACTAAAATCAACTCAACATTCATTTGTGGCAGTGGAGTTTGACACTTTCAATAATCCATCATGGGACCCTTCAGGTGAAGGCACTCATGTTGGTTTGAATTTCAACTCTATGAGATCTAATATAACTAAACCATGGTTGACAAATATTCTTAAATGGAAAGTTTACAATTGCAGCATTGAGTACAATTCCGACACTTTTAATTTGAGTGTATCATTCACCATGTATGATGATGATGAGGATAAACCAGTTGAAGGGTACATATCACACGAGGTTGATTTGAGAGATTTATTACCAGAGAGGGTTATTGTTGGCTTCTCTGCTGCAACAGGAAGATTGTACGAGGTGCATACTCTTAGATCATGGTCATTTCATTCAAGTCTATTCAGTGATGAGACCAGATATCAGATAATGGCCCCAATTCCCAGTCCTATAATTTCTGAAAAAGAAAACAAGATAGGATTGAAGGTAGGGCTTGGAATTGGTACAGGATTGGCTGTGAGTTTATCAGGGATGGTTTGTATACTATTATGGAAGAGTAGGGGAAGAAAAAAAGAGTTTAGTTTTGATCTTGACATGGATGATGAATTCCAAAAGGGCTCTGGACCCAAGAGGTTTTCCTACAATAAACTAGTGAGTGCAACAAATAAATTTTCAGAGTCAGATAAGGTGGGGCAAGGTGGTTTTGGTGGTGTATACAAAGGTTATTTGAAAGGCATGAACTCCTACGTTGCTATCAAGAGGATATCAAGAGGATCTAGACAGGGAATACTAGAATATGCGACTGAAGTGAAGGTCATAAGTCAACTGAGACACAGGAATCTAGTACAACTTCTAGGTTGGTGCCACAAGAAGAATGATTTTCTTCTTATATATGAGTTCATGTCAAATGGAAGCTTAGATTCTCATTTGTATGGTAAGAAAAGCTTCTTGACATGGACGGCGAGGAATAACATTGCATTGGGCCTGGCTTCAGCATTGCTTTATTTACAGGAAGAATGGGAGCAGTGTGTGCTTCACAGGGACATTAAATCAAGCAACATTATGTTGGATTCATGTTTCAATACTAAGCTTGGTGATTTTGGTTTAGCTAGGCTTGTGGATCATGAGAAAGGGTCACAAACCACACTTATAGCTGGAACAAGGGGTTATATTGCCCCTGAATATTTCACATCAGGAAAAGCTACTAAGGAATCTGATATATACAGCTTTGGGGTAGTGTTATTGGAAATAGTCACCGGAAGGAAAGCTATTGAAAGAGAAGAAAAGGAGGGTCAAATAAGTGTTGTTGAGTGGGTTTGGGAGCTCTATGGATTTGGAAAGTTCCTTGAAGCAGCTGACCCTAGGTTAGGTGGGGCATTTGATGAGCAGCAATTGGAACGTTTGGTGATCGTTGGCCTTTGGTGTGCTCATCCAGATTACTTATTTAGACCTTCTATAAGACAAGTGATTCATGTTCTCAAATTTGAGTCTTCTCTGCCAATTCTCCCAGAAAAAATGCCTGTGCCAACCTATCTTCCTCCAACAATAAAAGCACTTTTTTCTTCAGTTTCATCCACCTATTGGACAAATAGTTAG 2007 0.3906 MVSLHISLRTQTFVFCYAIGTICIFQIIYLANSLSFDYPYFKNGDVNWEGDASPYKGAIQITSNTLDQNNNYSVGRVTSFKQMHLWDLKSGNLSDFTTNFSFVVFSNTQNYGDGMVFFMADPNLPVLKNIKEGGGLGLVDADQVLKSTQHSFVAVEFDTFNNPSWDPSGEGTHVGLNFNSMRSNITKPWLTNILKWKVYNCSIEYNSDTFNLSVSFTMYDDDEDKPVEGYISHEVDLRDLLPERVIVGFSAATGRLYEVHTLRSWSFHSSLFSDETRYQIMAPIPSPIISEKENKIGLKVGLGIGTGLAVSLSGMVCILLWKSRGRKKEFSFDLDMDDEFQKGSGPKRFSYNKLVSATNKFSESDKVGQGGFGGVYKGYLKGMNSYVAIKRISRGSRQGILEYATEVKVISQLRHRNLVQLLGWCHKKNDFLLIYEFMSNGSLDSHLYGKKSFLTWTARNNIALGLASALLYLQEEWEQCVLHRDIKSSNIMLDSCFNTKLGDFGLARLVDHEKGSQTTLIAGTRGYIAPEYFTSGKATKESDIYSFGVVLLEIVTGRKAIEREEKEGQISVVEWVWELYGFGKFLEAADPRLGGAFDEQQLERLVIVGLWCAHPDYLFRPSIRQVIHVLKFESSLPILPEKMPVPTYLPPTIKALFSSVSSTYWTNS 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02263 668 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 286 IPR013320 -
Vifa6g02263 668 ProSiteProfiles Protein kinase domain profile. 361 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02263 668 Gene3D - 31 284 - -
Vifa6g02263 668 SUPERFAMILY Protein kinase-like (PK-like) 345 655 IPR011009 -
Vifa6g02263 668 SMART serkin_6 361 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02263 668 PANTHER - 59 632 - -
Vifa6g02263 668 ProSitePatterns Legume lectins beta-chain signature. 153 159 IPR019825 -
Vifa6g02263 668 FunFam L-type lectin-domain containing receptor kinase IX.1 346 437 - -
Vifa6g02263 668 FunFam Lectin-domain containing receptor kinase A4.3 438 650 - -
Vifa6g02263 668 Pfam Legume lectin domain 33 271 IPR001220 GO:0030246
Vifa6g02263 668 FunFam L-type lectin-domain containing receptor kinase IX.1 32 279 - -
Vifa6g02263 668 Gene3D Phosphorylase Kinase; domain 1 346 437 - -
Vifa6g02263 668 Pfam Protein kinase domain 362 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02263 668 CDD lectin_legume_LecRK_Arcelin_ConA 34 271 IPR001220 GO:0030246
Vifa6g02263 668 Gene3D Transferase(Phosphotransferase) domain 1 438 650 - -
Vifa6g02263 668 ProSitePatterns Legume lectins alpha-chain signature. 241 250 IPR000985 -
Vifa6g02263 668 ProSitePatterns Protein kinases ATP-binding region signature. 367 390 IPR017441 GO:0005524
Vifa6g02263 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 481 493 IPR008271 GO:0004672|GO:0006468
Vifa6g02263 668 CDD STKc_IRAK 367 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02263 Vifa-Chr6 793358446 793360452 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02263 45 648 Receptor kinase-like Gene Family AT5G10530 46.992 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vifa6g02263 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02263 - - gmx:100780181 1007.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g02263 6 793358446 793360452 Vifa6g02263 6 793358446 793360452 ECH