Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02262 ATGGTTTGTATACTATTATGGAAGAGTAGGGGAAGAAAAAAAGAGTTTAGTTTTGATCTTGACATGGATGATGAATTCCAAAAGGGCTCTGGACCCAAGAGGTTTTCCTACAATAAACTAGTGAGTGCAACAAATAAATTTTCAGAGTCAGATAAGGTGGGGCAAGGTGGTTTTGGTGGTGTATACAAAGGTTATTTGAAAGGCATGAACTCCTACGTTGCTATCAAGAGGATATCAAGAGGATCTAGACAGGGAATACTAGAATATGCGACTGAAGTGAAGGTCATAAGTCAACTGAGACACAGGAATCTAGTACAACTTCTAGGTTGGTGCCACAAGAAGAATGATTTTCTTCTTATATATGAGTTCATGTCAAATGGAAGCTTAGATTCTCATTTGTATGGTAAGAAAAGCTTCTTGACATGGACGGCGAGGAATAACATTGCATTGGGCCTGGCTTCAGCATTGCTTTATTTACAGGAAGAATGGGAGCAGTGTGTGCTTCACAGGGACATTAAATCAAGCAACATTATGTTGGATTCATGTTTCAATACTAAGCTTGGTGATTTTGGTTTAGCTAGGCTTGTGGATCATGAGAAAGGGTCACAAACCACACTTATAGCTGGAACAAGGGGTTATATTGCCCCTGAATATTTCACATCAGGAAAAGCTACTAAGGAATCTGATATATACAGCTTTGGGGTAGTGTTATTGGAAATAGTCACCGGAAGGAAAGCTATTGAAAGAGAAGAAAAGGAGGGTCAAATAAGTGTTGTTGAGTGGGTTTGGGAGCTCTATGGATTTGGAAAGTTCCTTGAAGCAGCTGACCCTAGGTTAGGTGGGGCATTTGATGAGCAGCAATTGGAACGTTTGGTGATCGTTGGCCTTTGGTGTGCTCATCCAGATTACTTATTTAGACCTTCTATAAGACAAGTGATTCATGTTCTCAAATTTGAGTCTTCTCTGCCAATTCTCCCAGAAAAAATGCCTGTGCCAACCTATCTTCCTCCAACAATAAAAGCACTTTTTTCTTCAGTTTCATCCACCTATTGGACAAATAGTTAG 1065 0.3981 MVCILLWKSRGRKKEFSFDLDMDDEFQKGSGPKRFSYNKLVSATNKFSESDKVGQGGFGGVYKGYLKGMNSYVAIKRISRGSRQGILEYATEVKVISQLRHRNLVQLLGWCHKKNDFLLIYEFMSNGSLDSHLYGKKSFLTWTARNNIALGLASALLYLQEEWEQCVLHRDIKSSNIMLDSCFNTKLGDFGLARLVDHEKGSQTTLIAGTRGYIAPEYFTSGKATKESDIYSFGVVLLEIVTGRKAIEREEKEGQISVVEWVWELYGFGKFLEAADPRLGGAFDEQQLERLVIVGLWCAHPDYLFRPSIRQVIHVLKFESSLPILPEKMPVPTYLPPTIKALFSSVSSTYWTNS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02262 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Vifa6g02262 354 ProSitePatterns Protein kinases ATP-binding region signature. 53 76 IPR017441 GO:0005524
Vifa6g02262 354 Pfam Protein kinase domain 48 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02262 354 Gene3D Phosphorylase Kinase; domain 1 32 123 - -
Vifa6g02262 354 FunFam Lectin-domain containing receptor kinase A4.3 124 336 - -
Vifa6g02262 354 FunFam L-type lectin-domain containing receptor kinase IX.1 32 123 - -
Vifa6g02262 354 PANTHER - 15 318 - -
Vifa6g02262 354 CDD STKc_IRAK 53 317 - -
Vifa6g02262 354 ProSiteProfiles Protein kinase domain profile. 47 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02262 354 Gene3D Transferase(Phosphotransferase) domain 1 124 336 - -
Vifa6g02262 354 SUPERFAMILY Protein kinase-like (PK-like) 31 341 IPR011009 -
Vifa6g02262 354 SMART serkin_6 47 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02262 Vifa-Chr6 793358446 793359510 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02262 1 334 Receptor kinase-like Gene Family AT5G10530 58.876 7.23e-144 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vifa6g02262 Pkinase 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02262 - - gmx:100780181 586.26