Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02260 ATGCATGTCTTGTTATCTATTTTCTTACTCTTGAACTTCATTATTCCATATGCATTCTCTTTGATCTTTAACTTCACTACTTTTGATCCTAATGACAAAACCATAATCTATGAAGGATCAGCAAATCCTGCTTCATCAGCTATCCAACTTACAATAAACCAACAAGGTAAACTCATGAATGGAAGCATTGGTAGAGCCACATATTACCAACCTATCCACCTTTGGAACAAAACCACTAACAATCTCACAGATTTCACATCTTATTTTACCTTTACTATAAATTCACAGAATAGAAAAAATTATGGAGATGGTATTGCATTCTTCCTTGAACCTTCTGGTTCCAAGAAGCCTAATGCAACAAAAGGAGGTTCTATGGGTTTAACTCTTGATAACCAAGCATTGAACTCAACTGAAAATCCATTTGTTGCTGTGGAGTTTGATATCTATCCGAACCGTTGGGATCCGCCTCATGAACATGCTGGAATCGACATCAACTCTATGAGATCTGTTGCGAATGTGACATGGTTGGCTGATATCAAACAAGGTGAACTCAATGAGGCTTGGATCAATTATAATTCTGGTTCACGAAATCTAAGTATTATATTCACTGGTTTTAATAATGAAACTTCTACCATTGTGAATCAACATTTATCTGCCATAGTTGATCTCAGACTTTATCTGCCAGAGTTTGTCACTGTTGGTTTTTCAGCTGCCACAGGAAATGCAACTGCTATACACAGTATCTCTTCTTGGGATTTTAGCTCGACTTTGGAAGCACAACAAGATAACAACAAAACAAACACACAGGACCCAATTGCAAGTTCTCCATCCTTCAACACATCTACTAGTAACAAGAAAAAGGCCAAGACAGGACTAGCAGCCGGATCGGGAATTGGTGGATTTGTTTTCTTTGGGTTGTTGGGTTTTGTTTCAGTTATTTTCTGGAAAAAGTGGAAGAAAGGAAAAGAAGAGGAAGATGGTGAATTTGAAGAGTACATGGGTGAGGAATTTGGAAGAGGGACAGGACCCAAGAAGTATACATATGCAGAACTAGCACATGCAGCTAATAATTTCAAAGATGAGCATAAACTTGGACAAGGAGGATTTGGAGGTGTTTATAGAGGTTTTCTTAAAGACACAAAATCTTATGTTGCTATTAAGAGGGTGTCAGAAGATTCTCATCAAGGAATAAAGGAGTTTGCATCAGAAGTAACAATTATTAGCAAATTAAGGCATAGAAATCTAGTGCAGTTGATTGGTTGGTGTCATGAAAGGAAGAAATTATTGCTTGTATATGAGTACATGCCAAATGGTAGTTTAGACATTCATCTTTTCAAAAAACAAAGCTTTTTGAAATGGGCTGTCAGATATACAATAGCTAAAGGCTTGGCTTCTGCATTGCTATATCTGCATGAAGAATGGGAACAATGTGTTATACATAGAGACATAAAAGCAAGCAACATAATGCTTGACTCAGAGTTTAATGCAAAACTTGGAGATTTTGGTTTAGCAAGGTTTGTGGATCATGGAAAAGGTGCACAAACAACAGCTTTAGCAGGGACTATGGGATACTTAGCTCCTGAATGTGCTACCATTGGAAGGGCAAGTAAAGAAACAGATGTGTATAGTTTTGGAATTGTTGCTTTAGAGATAGCGTGTGGAAGAAAACCTATAGAAAATAAGACTCAAGAAAATGAAATAAACATTGTGGAGTGGGTTTGGTGGTTATATGGAAGAGGGAGTATTCTTGAAGCAGTTGATCCAAGACTGAGTGGAGATTTTGATGAAGAACAAATCAAGTGCTTGATGATTGTTGGTCTTTGGTGTGCTCACCCTGATCCTAGTAATAGGCCTTCAATAAGACAAGCTATTCAAGTGCTTAATTTTGAAGTTCCACCGCCTAATCTTCCATCAAGTATGCCTGTGCCAACATATCTTGAGGGGCCTTTGAACTCATTCAGCATAAATGGTTCAGATGAAGGTCAGAGCAAGAATGTAATAAACTTTAGTTCAAACACAAAGTCAACTACTTCTGATTTTTCTTCTTCTATGTCGGTTTTGTATTCTAGATAA 2073 0.3729 MHVLLSIFLLLNFIIPYAFSLIFNFTTFDPNDKTIIYEGSANPASSAIQLTINQQGKLMNGSIGRATYYQPIHLWNKTTNNLTDFTSYFTFTINSQNRKNYGDGIAFFLEPSGSKKPNATKGGSMGLTLDNQALNSTENPFVAVEFDIYPNRWDPPHEHAGIDINSMRSVANVTWLADIKQGELNEAWINYNSGSRNLSIIFTGFNNETSTIVNQHLSAIVDLRLYLPEFVTVGFSAATGNATAIHSISSWDFSSTLEAQQDNNKTNTQDPIASSPSFNTSTSNKKKAKTGLAAGSGIGGFVFFGLLGFVSVIFWKKWKKGKEEEDGEFEEYMGEEFGRGTGPKKYTYAELAHAANNFKDEHKLGQGGFGGVYRGFLKDTKSYVAIKRVSEDSHQGIKEFASEVTIISKLRHRNLVQLIGWCHERKKLLLVYEYMPNGSLDIHLFKKQSFLKWAVRYTIAKGLASALLYLHEEWEQCVIHRDIKASNIMLDSEFNAKLGDFGLARFVDHGKGAQTTALAGTMGYLAPECATIGRASKETDVYSFGIVALEIACGRKPIENKTQENEINIVEWVWWLYGRGSILEAVDPRLSGDFDEEQIKCLMIVGLWCAHPDPSNRPSIRQAIQVLNFEVPPPNLPSSMPVPTYLEGPLNSFSINGSDEGQSKNVINFSSNTKSTTSDFSSSMSVLYSR 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02260 690 Gene3D - 20 271 - -
Vifa6g02260 690 FunFam L-type lectin-domain containing receptor kinase IX.1 19 266 - -
Vifa6g02260 690 FunFam Lectin-domain containing receptor kinase A4.3 435 647 - -
Vifa6g02260 690 MobiDBLite consensus disorder prediction 262 285 - -
Vifa6g02260 690 CDD lectin_legume_LecRK_Arcelin_ConA 21 257 IPR001220 GO:0030246
Vifa6g02260 690 PANTHER - 51 634 - -
Vifa6g02260 690 MobiDBLite consensus disorder prediction 666 690 - -
Vifa6g02260 690 SMART serkin_6 358 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02260 690 ProSitePatterns Protein kinases ATP-binding region signature. 364 387 IPR017441 GO:0005524
Vifa6g02260 690 ProSitePatterns Legume lectins alpha-chain signature. 227 236 IPR000985 -
Vifa6g02260 690 SUPERFAMILY Protein kinase-like (PK-like) 342 646 IPR011009 -
Vifa6g02260 690 Gene3D Transferase(Phosphotransferase) domain 1 435 647 - -
Vifa6g02260 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Vifa6g02260 690 ProSiteProfiles Protein kinase domain profile. 358 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02260 690 Pfam Legume lectin domain 21 267 IPR001220 GO:0030246
Vifa6g02260 690 FunFam L-type lectin-domain containing receptor kinase IX.1 343 434 - -
Vifa6g02260 690 Pfam Protein kinase domain 358 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02260 690 SUPERFAMILY Concanavalin A-like lectins/glucanases 19 267 IPR013320 -
Vifa6g02260 690 CDD STKc_IRAK 364 628 - -
Vifa6g02260 690 Gene3D Phosphorylase Kinase; domain 1 343 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02260 Vifa-Chr6 793311027 793313099 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02260 3 645 Receptor kinase-like Gene Family AT5G10530 47.546 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vifa6g02260 Pkinase 6e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02260 - - cam:101491058 1023.85