Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02258 ATGTTAGACTCCAACTTCAATACTAAGCTTGGGGATTTCGGTCTAGCTAGACTTATGGATCATGAAAAAGGGTCAGAAACCACAGTTGTTGCTGGAACCAGAGGCTACCTAGCACCTGAATACATGGACACGGGCAAGGCTAGAAAGAAATCTGACATATTCAGTTTTGGGGTTGTTTTGTTGGAGATAGCCTGTGGAAAAAAAGCCATACTCCACCAAGAACTGGAGGGTGAAGTTCCATTAGTTGAGTGGGTCTGGGAGCTATATGGATTGAGAAATCTAACTGTAGCAGTAGATCCAAAGCTATGTGGGGGTATATGA 321 0.4361 MLDSNFNTKLGDFGLARLMDHEKGSETTVVAGTRGYLAPEYMDTGKARKKSDIFSFGVVLLEIACGKKAILHQELEGEVPLVEWVWELYGLRNLTVAVDPKLCGGI 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02258 106 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1 102 - -
Vifa6g02258 106 Gene3D Transferase(Phosphotransferase) domain 1 1 106 - -
Vifa6g02258 106 ProSiteProfiles Protein kinase domain profile. 1 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02258 106 Pfam Protein kinase domain 1 72 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02258 106 SUPERFAMILY Protein kinase-like (PK-like) 1 103 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02258 Vifa-Chr6 793289538 793289858 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02258 1 102 Receptor kinase-like Gene Family AT5G10530 58.654 1.05e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vifa6g02258 Pkinase 5.9e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02258 - - cam:101492002 192.586