LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa6g02257	ATGGCAGCATCTTACTATTACTATCAGAAAACTCCTCTTCTTGCTTTCTTTTTCGTACCGTTATCACTCTTGCTAGTTCTAACATCTCATGCAGCTGCATTATCATTCAACTATGACAACCTTAGTAGTGATAAAACAATTGCCTTCAATTTCTCAGGTGATGTCTCTCAAGACAACCAAGCTCTCCAACTCACAAAGTACGAGAAAGACAGTCTAGGTCGAGTCACATATTCAAAACTGTTTCATCTTTGGGACATAAACACGGGTGAAGTCACAGATTTCACTACTCGTTTCTCATTTACTATTAACGCCCCCAACAAAACCCACCATGGAGATGGAATCACCTTCTACTTGGCACACCCGAATTTTCCATTACCTGTTCCAAGAGATGGAAGTGGTATTGGTCTCGTGAGCCGAAACCAGTTGAGTAATCCAAATTACACAAAAGAAAATCCATTTGTGGCTGTGGAATTTGATACTTTTGTTAATGATTGGGATCCTAAATATGATCATGTGGGAATTGATGTTAACTCTATCGCCACTTCTTACACGACGCAGTGGTTCACTAGTATGGACGAAAGAGGATATGATGCTGAAGTGAGTTACAATTCAAGTTCAAACAACATTACTGTCACCTTCACAGGTTATCAAGATAACAACATAATCCAACAGCACTTGTCAAGTGTTGTTAATCTGAAAGATAATCTACCTGAATGGGTTGAATTTGGATTCACTTCAGCAACAGGGTTCTGGTGGGAGTATCATACTCTTAACTCATGGTCTTTCAAGTCAAGTTCAGATTTTGAAGCTGACAAGAACAAAACAAAAACTGGACTTGTCATAGGACTTGGTGTTATCGGTGGTGCTGCTGTTTTTATTTGTGTTATCGGGTTGGTTTGTTTTGCCAAACGGAAGCTGAGGAATAACAGAATGGAGGATGTTTTGCAGACCGATCTCGAAATGGATAATGATTTTGAAAGAAGCTCTCTGCCTAGGAAGTTTACCTATGAAGAACTTGCTACCGCAACCAACAACTTTGCAAAGGAACACAAAATCGGAGAGGGTGGTTTCGGAGGAGTCTACAAAGGATTCATAAGAGACTTAAAAACTCATGTTGCAATTAAGAAGGTTTCCAAGGGATCAAATCAAGGAGTAAAGGAATATGCATCCGAAGTCAAAGTTATAAGTCAATTGCGACAAAAGAATTTGGTTCAACTCTTTGGTTGGTGTCACAAACAAAATGATCTTCTATTAGTTTACGAGTTTATGGAAAACGGAAGCTTAGATTCTTATCTTTTCAAAGGTAAAGGTTTGTTGACATGGACGGTGCGATACAACATAGCTAGAGGCTTAGCCTCAGCATTATTGTACCTACATGAAGAATGTGAGCAGTGTGTACTTCATAGAGACATAAAATCAAGCAATATCATGTTGGATAGTAACTTTAACACAAAGCTTGGAGATTTCGGTTTGGCGAGACTAATGAACCATGAGACAGAATCAAAGACAACTGTTCTAGCAGGAACATATGGATATCTATCACCTGAAGCAGCAACTAGAGGTAAAGCTAGTAGAGAATCTGATGTATATAGTTTTGGAGTAGTTGCTTTGGAGATAGCATGTGGTAGAAAAGCAATTGAACCAAGTCTTAGTGAAGAACATGTTTACTTGGTGGATTGGGTTTGGGAGCTTTATGGTATAGGTGAAATTCTTAAAGCAGGTGATTCAAGATTGTATGGTGAATTCAGTGAGAAGGAAATGGAGAGGTTGATGATTGTTGGACTTTGGTGTACTCTTGTAGATCATGTTCAGAGGCCTATGATTAGACAAGTTGTTCAGGTTCTGAATTTTGATGCTCCTTTGCCTACTCTTCCATTACAGATGCATTCATCTTTCAATTCTGTGTCCTCTAAATACAAGACTAGTGGTTTTGAAAATAACAAAAATGGGACCTCAACTTCAAGCAATAGTACCTTCACAGGGTCATCACAATCAAGCACAGCATTTGAAGTCATTTCTCCTACAGCTGCTCTTCTAAATACATACAACACCATTTGA	2058	0.3878	MAASYYYYQKTPLLAFFFVPLSLLLVLTSHAAALSFNYDNLSSDKTIAFNFSGDVSQDNQALQLTKYEKDSLGRVTYSKLFHLWDINTGEVTDFTTRFSFTINAPNKTHHGDGITFYLAHPNFPLPVPRDGSGIGLVSRNQLSNPNYTKENPFVAVEFDTFVNDWDPKYDHVGIDVNSIATSYTTQWFTSMDERGYDAEVSYNSSSNNITVTFTGYQDNNIIQQHLSSVVNLKDNLPEWVEFGFTSATGFWWEYHTLNSWSFKSSSDFEADKNKTKTGLVIGLGVIGGAAVFICVIGLVCFAKRKLRNNRMEDVLQTDLEMDNDFERSSLPRKFTYEELATATNNFAKEHKIGEGGFGGVYKGFIRDLKTHVAIKKVSKGSNQGVKEYASEVKVISQLRQKNLVQLFGWCHKQNDLLLVYEFMENGSLDSYLFKGKGLLTWTVRYNIARGLASALLYLHEECEQCVLHRDIKSSNIMLDSNFNTKLGDFGLARLMNHETESKTTVLAGTYGYLSPEAATRGKASRESDVYSFGVVALEIACGRKAIEPSLSEEHVYLVDWVWELYGIGEILKAGDSRLYGEFSEKEMERLMIVGLWCTLVDHVQRPMIRQVVQVLNFDAPLPTLPLQMHSSFNSVSSKYKTSGFENNKNGTSTSSNSTFTGSSQSSTAFEVISPTAALLNTYNTI	685

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa6g02257	685	SMART	serkin_6	346	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa6g02257	685	Gene3D	Transferase(Phosphotransferase) domain 1	423	634	-	-
	Vifa6g02257	685	Gene3D	-	32	280	-	-
	Vifa6g02257	685	Pfam	Protein kinase domain	347	553	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa6g02257	685	SUPERFAMILY	Protein kinase-like (PK-like)	329	632	IPR011009	-
	Vifa6g02257	685	CDD	lectin_legume_LecRK_Arcelin_ConA	34	265	IPR001220	GO:0030246
	Vifa6g02257	685	ProSiteProfiles	Protein kinase domain profile.	346	624	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa6g02257	685	Pfam	Legume lectin domain	34	275	IPR001220	GO:0030246
	Vifa6g02257	685	SUPERFAMILY	Concanavalin A-like lectins/glucanases	32	266	IPR013320	-
	Vifa6g02257	685	PANTHER	-	54	622	-	-
	Vifa6g02257	685	FunFam	Lectin-domain containing receptor kinase A4.3	423	634	-	-
	Vifa6g02257	685	ProSitePatterns	Protein kinases ATP-binding region signature.	352	376	IPR017441	GO:0005524
	Vifa6g02257	685	ProSitePatterns	Legume lectins alpha-chain signature.	236	245	IPR000985	-
	Vifa6g02257	685	Gene3D	Phosphorylase Kinase; domain 1	331	422	-	-
	Vifa6g02257	685	ProSitePatterns	Legume lectins beta-chain signature.	154	160	IPR019825	-
	Vifa6g02257	685	FunFam	L-type lectin-domain containing receptor kinase IX.1	331	422	-	-
	Vifa6g02257	685	FunFam	L-type lectin-domain containing receptor kinase IX.1	32	276	-	-
	Vifa6g02257	685	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	466	478	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa6g02257	Vifa-Chr6	793282956	793285013	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa6g02257	21	628	Receptor kinase-like Gene Family	AT5G10530	45.338	8.45e-169	496

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vifa6g02257		Pkinase	9e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa6g02257	-		-	cam:101491058	1039.64