Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02249 ATGTTGCAGCTTTCAATTCAACGCGCAAAGTTGAAGTTTCTCATGCCTCGGATCTCTGCTTTGGGAAATTCCCATTTCTCAACGGCGGCTCAATCATCTTCCAGTAAACACAATGCTCCGAGGGTTCCCAATCTTATTGGGGGAAGGCTTCTTGACTCGAAAGCATCCAATTTCATCGATGTTATAAACCCGGCAACACAAGAAGTTGTTTCACAAGTTCCGTTGACTACAGATGAAGAGTTTAAAGCTGCTGTATCGGCAGCAAAGAAGGCATTTCCGTCTTGGCGTAACACTCCGGTTACGACGCGCCAACGTGTTATGTTGAAGTTCCAGGAGCTCATACGCAGAGATATGGATAAACTTGCTCTTAATGTGACCACTGAACAAGGAAAGACACTTAAGGATGCACAAGGAGATGTATTTCGTGGCTTAGAGGTGGTTGAACATGCTTGTGGGATGGGAACTCTACAAATGGGAGAGTATGTTTCAAATGTATCACATGGAGTCGACACATACAGTGTTAGAGAACCAATTGGTGTTTGTGCTGGAATTTGTCCTTTCAACTTTCCTGCTATGATTCCCTTATGGATGTTTCCCGTGGCAGTTACGTGTGGCAATACATTTGTTCTAAAACCATCAGAGAAAGACCCAGGTGCTTCTATGATGCTTGCGGAATTGGCATTGGAGGCTGGTTTGCCCGAGGGTGTCTTAAATGTTGTTCATGGAACTCATGATGTTGTGAATGCCATTTGTGATGATGACGATATTAAAGCCATATCATTTGTTGGTTCTAATGTTGCTGGAATGCACATATATTCAAGAGCAGCAGCTAAAGGAAAACGTGTTCAATCTAATATGGGGGCCAAAAATCATGCAATTGTCATGCCAGATGCAAATGTCGACGCCACTGTAAATGCTTTAGTTGCTGCTGGTTTTGGAGCGGCTGGACAGAGGTGCATGGCTCTCAGCACAGTTGTTTTTGTCGGAGGCGCCCAACAATGGGAAACGAAAATCATAGAGCGTGCGAAAGCTCTTAAAGTAAATGCTGGAACTGAACCTGATGCAGATCTTGGTCCGGTTATCAGCAAACAGGCAAAGGAGCGAGTACACTCATTAGTTCAATCTGGAGTCGAGAGTGGTGCCAAGCTGCTGCTTGATGGAAGAAATATAGTGGTCCCAGGATATGAATCTGGAAATTTTGTTGGCCCAACCATCTTATCTAATATCACTACCAACATGGAGTGCTACAAGGAGGAGATTTTTGGCCCAGTTCTTCTTTTTACGGAGGCTGATAGCTTGGAAGAGGCCATAAGCATTGTCAACAAAAACAAGTATGGAAATGGTGCTTCTATATTTACTACTTCTGGTGTCGCTGCAAGGAAATTTCAGACCGAGATTGAGGCCGGGCAGGTCGGTGTCAATGTTCCTATTCCAGTTCCTTTGCCATTTTTCTCATTTACTGGCAACAAGGCGTCATTTGCCGGCGATCTCAATTTCTACGGTAAGGCAGGGGTTAACTTTTTTACACAGATTAAAACAATAACTCAGCAGTGGAAGGATTCAGTAGGCGGTAGCAAGATTAACTTGGCAATGCCAACCTCTCAAAAATCTTGA 1614 0.4405 MLQLSIQRAKLKFLMPRISALGNSHFSTAAQSSSSKHNAPRVPNLIGGRLLDSKASNFIDVINPATQEVVSQVPLTTDEEFKAAVSAAKKAFPSWRNTPVTTRQRVMLKFQELIRRDMDKLALNVTTEQGKTLKDAQGDVFRGLEVVEHACGMGTLQMGEYVSNVSHGVDTYSVREPIGVCAGICPFNFPAMIPLWMFPVAVTCGNTFVLKPSEKDPGASMMLAELALEAGLPEGVLNVVHGTHDVVNAICDDDDIKAISFVGSNVAGMHIYSRAAAKGKRVQSNMGAKNHAIVMPDANVDATVNALVAAGFGAAGQRCMALSTVVFVGGAQQWETKIIERAKALKVNAGTEPDADLGPVISKQAKERVHSLVQSGVESGAKLLLDGRNIVVPGYESGNFVGPTILSNITTNMECYKEEIFGPVLLFTEADSLEEAISIVNKNKYGNGASIFTTSGVAARKFQTEIEAGQVGVNVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFFTQIKTITQQWKDSVGGSKINLAMPTSQKS 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02249 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 287 487 IPR016163 GO:0016620
Vifa6g02249 537 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 312 323 IPR016160 GO:0016491
Vifa6g02249 537 CDD ALDH_F6_MMSDH 42 518 IPR010061 GO:0004491
Vifa6g02249 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 495 IPR016162 GO:0016491
Vifa6g02249 537 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 287 487 - -
Vifa6g02249 537 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 4 534 IPR010061 GO:0004491
Vifa6g02249 537 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 44 518 IPR010061 GO:0004491
Vifa6g02249 537 Pfam Aldehyde dehydrogenase family 56 514 IPR015590 GO:0016491
Vifa6g02249 537 SUPERFAMILY ALDH-like 38 519 IPR016161 GO:0016491
Vifa6g02249 537 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 46 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02249 Vifa-Chr6 792673019 792677616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02249 2 502 Aldehyde Dehydrogenase Gene Family AT2G14170 78.244 0.0 826
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02249 K00140 - gmx:100791508 942.954