Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02248 ATGGCTTTTTCATTTTTTCTTAAACTATCTTTCAAATTCCTTCATCATTTTGCATGGCCTCTTGTTGCTCTCCTTTATCCTCTGTGTGCTTCCATACAAGCAATCGAGACTGATTGTTATGCAGAAACTAAGAATTTGATCTCATATTGGATACTTCTTTCATTCATTTACCTCTTTGACTATGCTTTTATCAACCTTCTACCATGGTTGCGGCTCTGGCTGTACATTAAGCTAATCATCATCTTCTTGCTCACTATACCGGACTTTGGACGGGCTTCTTATGTTTATAATAACCTTTTTCGCCCCATGAAACTGCAAATAGTCGTGTGGAGGTTTAATAACTATTGGAGGAAGTGTTTTGTTGAGAAAGATGAATTTTTAATGCACGCGGAGAGATATATGAGGGAAAATGGAACTGAAGCCTTAGAGAAACTCATTGCTAGCAAGAACATAATGTGTACGCCTGATGCAGAAGTGACAAATGAAATCATATCTACTGATAGTAAAGAAATGCTAAAAACAAATGGAGAAAGACTCCAAACTGAGCACCTAGACATCAAAGATTTGGAGGCTGTTGAGAAAAGAGAAACTCCTGCTACCAAGCAAGATATTCCTGTCCTGCCTAAAGTTGGGCCAAGTCAAAGTGCATCATCAGCCACAGTGGTAACCAAAGGAATCGCGGAAAATGACAGAGCTGGTGGAGAGGTTCCTCAGAGTTCTTCTACACAGAAGGAAATGCAGAAAGAGTGGAGTTGTTCTTTATGTTCGGTAACAACATCGAGCGAGATAACCTTGAACTCCCACCTCAATGGAAGGAGACACAGGGATAATACAGAAATTTTAATAGCAAAGAAGCAACCTATTCTTCAGAAACAAAAGGACGCAGAAGTGACAAATGAAATCTTAGTTACAGATAATAAAGAAATGCTAAAGACAAATGGAAGGAGACACAGGGCTGCTACTGAAGCTTTAATAGAAAAGAAGCAACCTACTCTTCAGAAACAAAAGGATGCAGAAGTGACAAATGAAATCTTAGCTACGGATAATAAAGAAATGCTAAAGACAAATGGAGATCAAAGACTCCAAATAGAACACAAAGACATCAAAGAGAAAAATGAAATCCCTGCAACCAAGCAAAGAACCTATGCTAATAATACTGTGGCAAGTCAAAAGGCATCACCAGACATGGTAGAAACCAAAGGAACAGCAGAGAGTGACAGAGCTGGTGGAGAGATTCCTCAGAGTTCTTCTACACTGAAGGAAGTGCAGAAAGAGTGGACTTGTGCTTTATGTTTGGTAACAACATCGAGCGAGGCAACCTTGTTTTCGCACCTCAATGGGAAGAAACACATGGCTAGTTGTGAAGCAGCTTTGAAAGCAAAGAAACAAACTGCTCTGCAGAAGCTGAAAATCTATCAGCCCAAAGAGGAGGTGAGACAGAAGAATGTTAACAATATGTTAGATTCCAATGTCAAGAATGGAGATGGTATTGTTCACAAAGTGTTGAAAGTAGTGTTGGATAATAAGGTGGAAAAACTGCAAAAGAACATGTCTGAGCCTGTTAGCATGCATAATTCCAAACTAATGTGTAGAGTCTGTGATGTTGTCCTTCATTGTGAGAATAATGTTGTCTCTCACTTAAATGGGAAGAAACATTTGGTTAATATGCAAAGCAAAGTTGATAGCTTAAAGAACCTTAGGGACATTGGCATTGCTTGA 1719 0.3909 MAFSFFLKLSFKFLHHFAWPLVALLYPLCASIQAIETDCYAETKNLISYWILLSFIYLFDYAFINLLPWLRLWLYIKLIIIFLLTIPDFGRASYVYNNLFRPMKLQIVVWRFNNYWRKCFVEKDEFLMHAERYMRENGTEALEKLIASKNIMCTPDAEVTNEIISTDSKEMLKTNGERLQTEHLDIKDLEAVEKRETPATKQDIPVLPKVGPSQSASSATVVTKGIAENDRAGGEVPQSSSTQKEMQKEWSCSLCSVTTSSEITLNSHLNGRRHRDNTEILIAKKQPILQKQKDAEVTNEILVTDNKEMLKTNGRRHRAATEALIEKKQPTLQKQKDAEVTNEILATDNKEMLKTNGDQRLQIEHKDIKEKNEIPATKQRTYANNTVASQKASPDMVETKGTAESDRAGGEIPQSSSTLKEVQKEWTCALCLVTTSSEATLFSHLNGKKHMASCEAALKAKKQTALQKLKIYQPKEEVRQKNVNNMLDSNVKNGDGIVHKVLKVVLDNKVEKLQKNMSEPVSMHNSKLMCRVCDVVLHCENNVVSHLNGKKHLVNMQSKVDSLKNLRDIGIA 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02248 572 Pfam TB2/DP1, HVA22 family 27 103 IPR004345 -
Vifa6g02248 572 SUPERFAMILY beta-beta-alpha zinc fingers 520 557 IPR036236 -
Vifa6g02248 572 SMART c2h2final6 426 450 IPR013087 -
Vifa6g02248 572 SMART c2h2final6 528 552 IPR013087 -
Vifa6g02248 572 SMART c2h2final6 250 274 IPR013087 -
Vifa6g02248 572 Gene3D Classic Zinc Finger 411 456 - -
Vifa6g02248 572 Gene3D Classic Zinc Finger 235 279 - -
Vifa6g02248 572 Gene3D Classic Zinc Finger 507 559 - -
Vifa6g02248 572 SUPERFAMILY beta-beta-alpha zinc fingers 234 285 IPR036236 -
Vifa6g02248 572 PANTHER OS06G0651300 PROTEIN-RELATED 369 558 - -
Vifa6g02248 572 SMART ZnF_U1_5 247 281 IPR003604 GO:0003676|GO:0008270
Vifa6g02248 572 SMART ZnF_U1_5 423 457 IPR003604 GO:0003676|GO:0008270
Vifa6g02248 572 SMART ZnF_U1_5 525 559 IPR003604 GO:0003676|GO:0008270
Vifa6g02248 572 SUPERFAMILY beta-beta-alpha zinc fingers 418 455 IPR036236 -
Vifa6g02248 572 MobiDBLite consensus disorder prediction 386 418 - -
Vifa6g02248 572 Pfam Zinc-finger of C2H2 type 426 450 - -
Vifa6g02248 572 Pfam Zinc-finger of C2H2 type 250 274 - -
Vifa6g02248 572 Pfam Zinc-finger of C2H2 type 530 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02248 Vifa-Chr6 792669185 792672574 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02248 426 557 C2H2 Transcription Factor Family AT2G19380 25.564 4.92e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02248 - - psat:127105426 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g02248 6 792669185 792672574 Vifa6g02248 6 792669185 792672574 ECH