Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02247 ATGGCTTTTTCATTTTTTCTTAAACTATCTTTCAAATTCCTTCATCATTTTGCATGGCCTCTTGTTGCTCTCCTTTATCCTCTGTGTGCTTCCATACAAGCAATCGAGACTGATTGTTATGCAGAAACTAAGAATTTGATCTCATATTGGATACTTCTTTCATTCATTTACCTCTTTGACTATGCTTTTATCAACCTTCTACCATGGTTGCGGCTCTGGCTGTACATTAAGCTAATCATCATCTTCTTGCTCACTATACCGGACTTTGGACGGGCTTCTTATGTTTATAATAACCTTTTTCGCCCCATGAAACTGCAAATAGTCGTGTGGAGGTTTAATAACTATTGGAGGAAGTGTTTTGTTGAGAAAGATGAATTTTTAATGCACGCGGAGAGATATATGAGGGAAAATGGAACTGAAGCCTTAGAGAAACTCATTGCTAGCAAGAACATAATGTGTACGCCTGATGCAGAAGTGACAAATGAAATCATATCTACTGATAGTAAAGAAATGCTAAAAACAAATGGAGAAAGACTCCAAACTGAGCACCTAGACATCAAAGATTTGGAGGCTGTTGAGAAAAGAGAAACTCCTGCTACCAAGCAAGATATTCCTGTCCTGCCTAAAGTTGGGCCAAGTCAAAGTGCATCATCAGCCACAGTGGTAACCAAAGGAATCGCGGAAAATGACAGAGCTGGTGGAGAGATTCCTCAGAGTTCTTCTACACTGAAGGAAGTGCAGAAAGAGTGGACTTGTGCTTTATGTTTGGTAACAACATCGAGCGAGGCAACCTTGTTTTCGCACCTCAATGGGAAGAAACACATGGCTAGTTGTGAAGCAGCTTTGAAAGCAAAGAAACAAACTGCTCTGCAGAAGCTGAAAATCTATCAGCCCAAAGAGGAGGTGAGACAGAAGAATGTTAACAATATGTTAGATTCCAATGTCAAGAATGGAGATGGTATTGTTCACAAAGTGTTGAAAGTAGTGTTGGATAATAAGGTGGAAAAACTGCAAAAGAACATGTCTGAGCCTGTTAGCATGCATAATTCCAAACTAATGTGTAGAGTCTGTGATGTTGTCCTTCATTGTGAGAATAATGTTGTCTCTCACTTAAATGGGAAGAAACATTTGGTTAATATGCAAAGCAAAGTTGATAGCTTAAAGAACCTTAGGGACATTGGCATTGCTTGA 1191 0.3921 MAFSFFLKLSFKFLHHFAWPLVALLYPLCASIQAIETDCYAETKNLISYWILLSFIYLFDYAFINLLPWLRLWLYIKLIIIFLLTIPDFGRASYVYNNLFRPMKLQIVVWRFNNYWRKCFVEKDEFLMHAERYMRENGTEALEKLIASKNIMCTPDAEVTNEIISTDSKEMLKTNGERLQTEHLDIKDLEAVEKRETPATKQDIPVLPKVGPSQSASSATVVTKGIAENDRAGGEIPQSSSTLKEVQKEWTCALCLVTTSSEATLFSHLNGKKHMASCEAALKAKKQTALQKLKIYQPKEEVRQKNVNNMLDSNVKNGDGIVHKVLKVVLDNKVEKLQKNMSEPVSMHNSKLMCRVCDVVLHCENNVVSHLNGKKHLVNMQSKVDSLKNLRDIGIA 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02247 396 Pfam Zinc-finger of C2H2 type 354 376 - -
Vifa6g02247 396 Pfam Zinc-finger of C2H2 type 250 274 - -
Vifa6g02247 396 Gene3D Classic Zinc Finger 235 280 - -
Vifa6g02247 396 Gene3D Classic Zinc Finger 331 383 - -
Vifa6g02247 396 Pfam TB2/DP1, HVA22 family 27 103 IPR004345 -
Vifa6g02247 396 SUPERFAMILY beta-beta-alpha zinc fingers 344 381 IPR036236 -
Vifa6g02247 396 SUPERFAMILY beta-beta-alpha zinc fingers 242 279 IPR036236 -
Vifa6g02247 396 SMART ZnF_U1_5 349 383 IPR003604 GO:0003676|GO:0008270
Vifa6g02247 396 SMART ZnF_U1_5 247 281 IPR003604 GO:0003676|GO:0008270
Vifa6g02247 396 PANTHER HVA22-LIKE PROTEINS 21 137 IPR004345 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02247 Vifa-Chr6 792669185 792672574 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02247 250 381 C2H2 Transcription Factor Family AT2G19380 25.564 2.47e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02247 - - psat:127105426 499.204