Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02246 ATGGCTTTTTCATTTTTTCTTAAACTATCTTTCAAATTCCTTCATCATTTTGCATGGCCTCTTGTTGCTCTCCTTTATCCTCTGTGTGCTTCCATACAAGCAATCGAGACTGATTGTTATGCAGAAACTAAGAATTTGATCTCATATTGGATACTTCTTTCATTCATTTACCTCTTTGACTATGCTTTTATCAACCTTCTACCATGGTCAATTCCTTACTCAATGTTGCGGCTCTGGCTGTACATTAAGCTAATCATCATCTTCTTGCTCACTATACCGGACTTTGGACGGGCTTCTTATGTTTATAATAACCTTTTTCGCCCCATGAAACTGCAAATAGTCGTGTGGAGGTTTAATAACTATTGGAGGAAGTGTTTTGTTGAGAAAGATGAATTTTTAATGCACGCGGAGAGATATATGAGGGAAAATGGAACTGAAGCCTTAGAGAAACTCATTGCTAGCAAGAACATAATGTGTACGCCTGATGCAGAAGTGACAAATGAAATCATATCTACTGATAGTAAAGAAATGCTAAAAACAAATGGAGAAAGACTCCAAACTGAGCACCTAGACATCAAAGATTTGGAGGCTGTTGAGAAAAGAGAAACTCCTGCTACCAAGCAAGATATTCCTGTCCTGCCTAAAGTTGGGCCAAGTCAAAGTGCATCATCAGCCACAGTGGTAACCAAAGGAATCGCGGAAAATGACAGAGCTGGTGGAGAGGTTCCTCAGAGTTCTTCTACACAGAAGGAAATGCAGAAAGAGTGGAGTTGTTCTTTATGTTCGGTAACAACATCGAGCGAGATAACCTTGAACTCCCACCTCAATGGAAGGAGACACAGGGATAATACAGAAATTTTAATAGCAAAGAAGCAACCTATTCTTCAGAAACAAAAGGACGCAGAAGTGACAAATGAAATCTTAGTTACAGATAATAAAGAAATGCTAAAGACAAATGGAAGGAGACACAGGGCTGCTACTGAAGCTTTAATAGAAAAGAAGCAACCTACTCTTCAGAAACAAAAGGATGCAGAAGTGACAAATGAAATCTTAGCTACGGATAATAAAGAAATGCTAAAGACAAATGGAGATCAAAGACTCCAAATAGAACACAAAGACATCAAAGAGAAAAATGAAATCCCTGCAACCAAGCAAAGAACCTATGCTAATAATACTGTGGCAAGTCAAAAGGCATCACCAGACATGGTAGAAACCAAAGGAACAGCAGAGAGTGACAGAGCTGGTGGAGAGATTCCTCAGAGTTCTTCTACACTGAAGGAAGTGCAGAAAGAGTGGACTTGTGCTTTATGTTTGGTAACAACATCGAGCGAGGCAACCTTGTTTTCGCACCTCAATGGGAAGAAACACATGGCTAGTTGTGAAGCAGCTTTGAAAGCAAAGAAACAAACTGCTCTGCAGAAGCTGAAAATCTATCAGCCCAAAGAGGAGGTGAGACAGAAGAATGTTAACAATATGTTAGATTCCAATGTCAAGAATGGAGATGGTATTGTTCACAAAGTGTTGAAAGTAGTGTTGGATAATAAGGTGGAAAAACTGCAAAAGAACATGTCTGAGCCTGTTAGCATGCATAATTCCAAACTAATGTGTAGAGTCTGTGATGTTGTCCTTCATTGTGAGAATAATGTTGTCTCTCACTTAAATGGGAAGAAACATTTGGTTAATATGCAAAGCAAAGTTGATAGCTTAAAGAACCTTAGGGACATTGGCATTGCTTGA 1737 0.3903 MAFSFFLKLSFKFLHHFAWPLVALLYPLCASIQAIETDCYAETKNLISYWILLSFIYLFDYAFINLLPWSIPYSMLRLWLYIKLIIIFLLTIPDFGRASYVYNNLFRPMKLQIVVWRFNNYWRKCFVEKDEFLMHAERYMRENGTEALEKLIASKNIMCTPDAEVTNEIISTDSKEMLKTNGERLQTEHLDIKDLEAVEKRETPATKQDIPVLPKVGPSQSASSATVVTKGIAENDRAGGEVPQSSSTQKEMQKEWSCSLCSVTTSSEITLNSHLNGRRHRDNTEILIAKKQPILQKQKDAEVTNEILVTDNKEMLKTNGRRHRAATEALIEKKQPTLQKQKDAEVTNEILATDNKEMLKTNGDQRLQIEHKDIKEKNEIPATKQRTYANNTVASQKASPDMVETKGTAESDRAGGEIPQSSSTLKEVQKEWTCALCLVTTSSEATLFSHLNGKKHMASCEAALKAKKQTALQKLKIYQPKEEVRQKNVNNMLDSNVKNGDGIVHKVLKVVLDNKVEKLQKNMSEPVSMHNSKLMCRVCDVVLHCENNVVSHLNGKKHLVNMQSKVDSLKNLRDIGIA 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02246 578 SMART c2h2final6 432 456 IPR013087 -
Vifa6g02246 578 SMART c2h2final6 256 280 IPR013087 -
Vifa6g02246 578 SMART c2h2final6 534 558 IPR013087 -
Vifa6g02246 578 SUPERFAMILY beta-beta-alpha zinc fingers 424 461 IPR036236 -
Vifa6g02246 578 PANTHER OS06G0651300 PROTEIN-RELATED 375 564 - -
Vifa6g02246 578 Pfam TB2/DP1, HVA22 family 27 109 IPR004345 -
Vifa6g02246 578 Gene3D Classic Zinc Finger 513 565 - -
Vifa6g02246 578 Gene3D Classic Zinc Finger 241 285 - -
Vifa6g02246 578 Gene3D Classic Zinc Finger 417 462 - -
Vifa6g02246 578 SMART ZnF_U1_5 429 463 IPR003604 GO:0003676|GO:0008270
Vifa6g02246 578 SMART ZnF_U1_5 531 565 IPR003604 GO:0003676|GO:0008270
Vifa6g02246 578 SMART ZnF_U1_5 253 287 IPR003604 GO:0003676|GO:0008270
Vifa6g02246 578 SUPERFAMILY beta-beta-alpha zinc fingers 240 291 IPR036236 -
Vifa6g02246 578 Pfam Zinc-finger of C2H2 type 536 558 - -
Vifa6g02246 578 Pfam Zinc-finger of C2H2 type 256 280 - -
Vifa6g02246 578 Pfam Zinc-finger of C2H2 type 432 456 - -
Vifa6g02246 578 MobiDBLite consensus disorder prediction 392 424 - -
Vifa6g02246 578 SUPERFAMILY beta-beta-alpha zinc fingers 526 563 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02246 Vifa-Chr6 792669185 792672574 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02246 432 563 C2H2 Transcription Factor Family AT2G19380 25.564 4.79e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02246 - - psat:127105426 871.692