Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02230 ATGGAAACGGTCAATTCCTGTGATGACAGACACTGTTCCAATGTAGCTCAACAACCTCAACCCATTCTTACTCCTGCCACTGAACTCACCATTTCCTTTCAAGGCCACGTCTATGTTTTCCCTTCCGTTACGCCACAAAAGCTGCAGGCTGTATTGTTACTCTTGGGAGGCCAGGAGACACCCAATACTCTCCCCTCCTCTCACTTTTTGCTGCCGCTAAACTATCACCACATTTCGGGAATAAATGATCCTTCCCGTAATTCAAAGCTTTCGCGGAGATTTGCATCGCTTGTTAGGTTCCGTGAAAAACGAAAAGACAGATGCTTTCAGAAGAAAATTCGCTACACTTGCCGGAAAGAGGTTGCTGAGAGGATGCAACGGAAGAATGGACAGTTTGCATCATTGAAGGAAGAGTACAATTCTCCTACTGAAAACCAGGATTCTAGCAGTGGTACACCTTGCCCAAAATCTACTGAGCGTAGATGTCAGCATTGTGAAATTGGTGAGAAGTCTACTCCAGTAATGCGTCGAGGACCGGCTGGTCCAAGATCTCTATGCAATGCTTGTGGGCTCATGTGGGCAAATAAGGGAACTCTGAGAGAGCTCAACAGATCAGGAAGGATTGCTTTTGAACACAATGAACTGGATACTTCAACTGACATAACACCTTCAACAACAGACCCAGAAAATTCATGTGCTGCGCAGGACAAGGAGGAAAGCCCCCGGGAAACAAAGCCTGTGCCAATGGATGCCATACAGTCACCCGAGATGATAGATGAGCAGTATATGGTCGAATCTGCTGAAGCAGTTATTGACAACTTGTCCATCCAAGTGGAGAACAATGCTCTTGATCTGCAAGAGCTGGATAAAACTATGGAGGATCTTGCTGATGCTTCTGGGATCGATTTTGAGATTCCTTCCTGTTTTGATGATCAGGTTGATGTTGATGATCCCCACATGAGGACTTACTGGCTGTGA 978 0.4591 METVNSCDDRHCSNVAQQPQPILTPATELTISFQGHVYVFPSVTPQKLQAVLLLLGGQETPNTLPSSHFLLPLNYHHISGINDPSRNSKLSRRFASLVRFREKRKDRCFQKKIRYTCRKEVAERMQRKNGQFASLKEEYNSPTENQDSSSGTPCPKSTERRCQHCEIGEKSTPVMRRGPAGPRSLCNACGLMWANKGTLRELNRSGRIAFEHNELDTSTDITPSTTDPENSCAAQDKEESPRETKPVPMDAIQSPEMIDEQYMVESAEAVIDNLSIQVENNALDLQELDKTMEDLADASGIDFEIPSCFDDQVDVDDPHMRTYWL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02230 325 PANTHER GATA TRANSCRIPTION FACTOR 28 25 301 IPR045280 GO:0006355
Vifa6g02230 325 CDD ZnF_GATA 161 200 IPR000679 GO:0006355|GO:0043565
Vifa6g02230 325 MobiDBLite consensus disorder prediction 214 253 - -
Vifa6g02230 325 Pfam GATA zinc finger 162 198 IPR000679 GO:0006355|GO:0043565
Vifa6g02230 325 ProSiteProfiles Tify domain profile. 22 57 IPR010399 -
Vifa6g02230 325 MobiDBLite consensus disorder prediction 128 161 - -
Vifa6g02230 325 ProSitePatterns GATA-type zinc finger domain. 162 189 IPR000679 GO:0006355|GO:0043565
Vifa6g02230 325 ProSiteProfiles CCT domain profile. 93 135 IPR010402 GO:0005515
Vifa6g02230 325 Gene3D - 155 212 IPR013088 GO:0006355|GO:0008270
Vifa6g02230 325 MobiDBLite consensus disorder prediction 133 157 - -
Vifa6g02230 325 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 157 209 - -
Vifa6g02230 325 Coils Coil 118 138 - -
Vifa6g02230 325 SMART GATA_3 156 209 IPR000679 GO:0006355|GO:0043565
Vifa6g02230 325 MobiDBLite consensus disorder prediction 215 231 - -
Vifa6g02230 325 SMART tify_2 22 57 IPR010399 -
Vifa6g02230 325 ProSiteProfiles GATA-type zinc finger domain profile. 156 213 IPR000679 GO:0006355|GO:0043565
Vifa6g02230 325 Pfam tify domain 27 56 IPR010399 -
Vifa6g02230 325 Pfam CCT motif 93 134 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02230 Vifa-Chr6 790169753 790173243 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02230 28 205 Tify Gene Family AT1G51600 55.376 4.34e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa6g02230 CCT 6.9e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02230 - - mtr:11405700 464.151