Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02218 ATGACTCGAAAGAAGATACAGATAAAGAAAATCGACAACATCAGTTCAAGGCAAGTGACTTTCTCTAAGAGGAGGAAAGGGCTTTTCAAGAAAGCTCAGGAGCTTTCAACTCTCTGTGATGCAGATGTAGCTCTTCTGGTTTTTTCTGCAACTAATAAGCTCTTTGAGTATGCTAGTTCAAGTATTCAACAAGTAATTGAAAGGCGCAATGGATGTTCAGAAAATCATATATCAATGGACCATCCATCTACTGATCAGTTTCAGGTTGAGAGTGAGTCTAGCGAAACATTGCGCAAGAAATTAGAAGATAAATCTCGTGAACTGAGGCAAATGAATGGAGAAGATTTGCAAGAATTGACAGTACAAGAACTCCAGAAACTAGAGGCTCAACTTAGAAGAACTTTGTCGAGTGTCTCAAAAAGGAAGGATGAAATGTTTATGCAAGGCATCAACGCCCTTAAGAGAAAGGAAGTGGAACTGATCCAAGAAAATCAAAGATTGAAGCATGTGGTACCAGACCTGATAATTGGACAAAGGCAACAATCATTGGAATCAGTTATTAGCGGTTCATCTTATTTTCTTGAAGACGATGGCAGTGACACATCTCTCAAGTTAGGGTTAACATTACATAATTGA 636 0.3852 MTRKKIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADVALLVFSATNKLFEYASSSIQQVIERRNGCSENHISMDHPSTDQFQVESESSETLRKKLEDKSRELRQMNGEDLQELTVQELQKLEAQLRRTLSSVSKRKDEMFMQGINALKRKEVELIQENQRLKHVVPDLIIGQRQQSLESVISGSSYFLEDDGSDTSLKLGLTLHN 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02218 211 Coils Coil 121 141 - -
Vifa6g02218 211 MobiDBLite consensus disorder prediction 75 95 - -
Vifa6g02218 211 ProSiteProfiles K-box domain profile. 87 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa6g02218 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vifa6g02218 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa6g02218 211 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Vifa6g02218 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa6g02218 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa6g02218 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa6g02218 211 FunFam Transcription factor, MADS-box 13 83 - -
Vifa6g02218 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vifa6g02218 211 Pfam K-box region 88 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa6g02218 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa6g02218 211 MobiDBLite consensus disorder prediction 75 91 - -
Vifa6g02218 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 159 - -
Vifa6g02218 211 Coils Coil 94 114 - -
Vifa6g02218 211 Coils Coil 150 170 - -
Vifa6g02218 211 CDD MADS_MEF2_like 3 76 IPR033896 GO:0000977|GO:0045944
Vifa6g02218 211 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02218 Vifa-Chr6 788472868 788487137 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02218 1 207 MADS-box Gene Family AT4G24540 48.624 8.47e-55 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa6g02218 K-box 1.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02218 - - aprc:113860188 270.781