Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02179 ATGGGACTTCATCACAGAAAACTCCTAACATGTGAATTCTTGTGTCATGATGTAGACTCTTGTTCCACAGACTGTGATGCCTGTATCAACGACTGCTACCACCCTCCACCACCACCATCTAACCACACCAAACACAAAACCTCAACTTACTTGATCATAAGTTTTTCTATTGTAGCAGCTGTTTTCATTGTTCTATGCTGCTATGCTATCTATGTCAAGTTTTTCTCCCGTAGGAACAGTTCAAGAAGGAGAACCTTGTTAACAAGGCAACAAACGGAACATGGTTTTGCTGTTGATGAACAACATGATGATGGTTCTGTTGTTGACCATCCCATATGGTATATTCGAACTCCTGGTCTTCAACAAGCAGTTATTAATGCAATCACTGTTGTTAAGTTTAAGAAAGGTGAAGGCTTGATTGATGGGTCAGATTGTTCTGTTTGTTTGAGTGAGTTTGAGGAAGATGAGAATCTTAGACTTTTGCCTAAGTGTAACCATGCTTTTCATTTACCATGTATTGATACATGGCTTGGATCACACACTAGCTGTCCTATGTGTAGAGCTCCTATTGTTGTTGATCCTTTAAGGATTCCTTCTATGGAGCCTAATGTTTTTGTCGAAAGTTCTCGGATCCAAGATTCGGAAAATAATGGTGGAAATGGAAATGGAATTGAAGATAGTGTTGTTGGTGATCAATTGAGAAATGGTGAAGAAGAAGAAGAAGAAGAAGCAAGGGAAGAGGTTGAGGAAAATGAGAGTTCAAGATTAGAGATGGTAAATGTGCAGCCTAGAAGATCAGTTTCTTTTGATTCTTCTTCTGCTGCTAAGATCAATCTTGCTCTTTCCAATAAGCAAGAGGTAGGTGAAGTCAATGAACAAATTATTTCAAAAAGGGTTGGTGAAATTGGCAATATGGTAAATATACATAGTGCTCCTAGTTCAATGGATAGGTCAAGATCCTTCAATGGAAAACACCTACTATCTTTGTATAGCAGCAATCAGAAGAAGTTAAATGTTCCACCTAGAAGCTTTTGA 1035 0.3845 MGLHHRKLLTCEFLCHDVDSCSTDCDACINDCYHPPPPPSNHTKHKTSTYLIISFSIVAAVFIVLCCYAIYVKFFSRRNSSRRRTLLTRQQTEHGFAVDEQHDDGSVVDHPIWYIRTPGLQQAVINAITVVKFKKGEGLIDGSDCSVCLSEFEEDENLRLLPKCNHAFHLPCIDTWLGSHTSCPMCRAPIVVDPLRIPSMEPNVFVESSRIQDSENNGGNGNGIEDSVVGDQLRNGEEEEEEEAREEVEENESSRLEMVNVQPRRSVSFDSSSAAKINLALSNKQEVGEVNEQIISKRVGEIGNMVNIHSAPSSMDRSRSFNGKHLLSLYSSNQKKLNVPPRSF 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02179 344 CDD RING-H2_EL5-like 144 187 - -
Vifa6g02179 344 SMART ring_2 145 186 IPR001841 -
Vifa6g02179 344 MobiDBLite consensus disorder prediction 211 256 - -
Vifa6g02179 344 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 41 193 IPR044675 -
Vifa6g02179 344 FunFam RING-H2 finger protein ATL54 120 193 - -
Vifa6g02179 344 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Vifa6g02179 344 Pfam Ring finger domain 144 187 IPR001841 -
Vifa6g02179 344 SUPERFAMILY RING/U-box 139 193 - -
Vifa6g02179 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 193 IPR013083 -
Vifa6g02179 344 Coils Coil 234 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02179 Vifa-Chr6 781801778 781802812 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02179 55 258 C3H Transcription Factor Family AT1G72220 41.463 2.55e-46 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02179 - - mtr:11411830 491.5