Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02167 ATGAGTGCAAATGTTGAGGGAGGGAATAAGGAAGGAAGCATAACAGTGACATGGGAGAATCTGAGAGTCACTGTTCCAAATGGAAACAAAAGGAAACCTATTCTTGAGGGTCTTACTGGTTATGCTCAACCTGGAAGGCTTTTGGCCATAATGGGCCCTTCTGGCTCAGGAAAATCCACACTTCTTGATGCTTTAGCAGGAAGATTAAGCTCAAACATAAAGCACACAGGAAAAATTCTAATCAATGGCCACAAACAAGCACTGGCTTATGGAATATCAGGCTATGTAACGCAAGACGAGGCTATGCTGTCAACGTTAACGGCCGGAGAAACTTTATACTATTCAGCTCAGCTTCAATTTCCAGATTCCATGTCCATAACAGAAAAAAAGGAGCAAGCAGATCTTATACTCAGAGAAATGGGCCTAATAGATGCTGTTAACACAAGGGTTGGAGGATGGAGTTCTAAAGGTCTAAGTGGAGGACAAAAGAGGAGACTTAGCATTTGCATCGAGATTCTAACGCGACCGAGACTTCTCTTCCTTGATGAACCAACGAGCGGACTCGATAGTGCAGCTTCTTATTATGTTATGAGTAGGATTGCGCGTTTAAATCTAAGTGACGGCGTTCCAAGGACTGTTGTTGTATCCATCCACCAACCTAGCAGTGAAGTTTTTGAACTTTTTCATGACCTTTGTCTTCTGTCTTCTGGTGAAACCGTATATTTTGGTCCGTCCTATGATGCAAATCAGTTTTTTGCTGCAAATGGTTTTCCTTGTCCGACACTCCACAATCCTTCTGATCACTACTTAAGGATAATAAACAAAGATTTTGAAATGGATGATGATGTTGAAGAAGGCTTTGGTAAGGGAGTAACCACAGAAGAAGCAATTGATATCCTTTTAAAGTCTTATAAATCGTCTCGAGTTAGAAAACGAGTTAAAAAAGAAGTTGCAAAAATAAGTGAAAGTGACTCCGGTGCAATAGGGAAGAAGAGGATCCATGCTGCATTTATCACTCAATGTCTTGTTCTTATAAGAAGATCTTCTTTGCAATTGTTTCGAGACGTTGGCAATTACTGGCTACGCTTAGTTGTCTTTGTTATAATTGCTATAAGCATTGGTTCTATCTTCTATAACATTGGTTCAACTAGTGGATCAGGATCTGTTCAGGGAAGAGGTTCACTCCTCACATTTCTTATATCAGTTCTGACTTTCATGACCCTTGTTGGTGGATTCTCTCCTCTTTTGGAGGAAATGAAGGTATTTGAACGAGAGAGATTGAACGGACACTATGGTGTTACTGCTTTTCTGATTGGAAATATATTTTCAGCTGTTCCTTACATTCTAATGATCTCTCTAATTCCTGGAGGAATAGCATACTACCTTTGTGGAATGCACAAAGGAGTAGAACACTTTGTATACTTCATTTCATTGCTATTAGCCATTGTGATGTGGGTTGAAAGTCTCATGTTGGTTGTTGGAAGCATATCACCAAACTATGTAATAGGAATGTTCATTACTGGTGGAGTTGAAGGACTCATGATATTAACAGCTGGATTCTATAGATTACCAAATGAACTACCTAAACCACTATGGAAATACCCTTTATACCATATATCATTCCTTAAGTATGCATTTCAAGGATCATTCAAGAATGAATTTGAAAAGTTGAATGTTTCTATGGGGACCAAAACTATGAGTGGTAGGGAAATATTGGATGACACATGGCATGTTGAAATGGGTTACTCAAAGTGGGTTGATCTTGTTATCATGTTTGGTATGATTGTGTTGTATAGAGTTTTATTCTTGGTCATCACTAAGAGCAAGGAGAAATTGAAGCCTTTTGTTGCAGTCATAAGTGGTCTTTGA 1869 0.3906 MSANVEGGNKEGSITVTWENLRVTVPNGNKRKPILEGLTGYAQPGRLLAIMGPSGSGKSTLLDALAGRLSSNIKHTGKILINGHKQALAYGISGYVTQDEAMLSTLTAGETLYYSAQLQFPDSMSITEKKEQADLILREMGLIDAVNTRVGGWSSKGLSGGQKRRLSICIEILTRPRLLFLDEPTSGLDSAASYYVMSRIARLNLSDGVPRTVVVSIHQPSSEVFELFHDLCLLSSGETVYFGPSYDANQFFAANGFPCPTLHNPSDHYLRIINKDFEMDDDVEEGFGKGVTTEEAIDILLKSYKSSRVRKRVKKEVAKISESDSGAIGKKRIHAAFITQCLVLIRRSSLQLFRDVGNYWLRLVVFVIIAISIGSIFYNIGSTSGSGSVQGRGSLLTFLISVLTFMTLVGGFSPLLEEMKVFERERLNGHYGVTAFLIGNIFSAVPYILMISLIPGGIAYYLCGMHKGVEHFVYFISLLLAIVMWVESLMLVVGSISPNYVIGMFITGGVEGLMILTAGFYRLPNELPKPLWKYPLYHISFLKYAFQGSFKNEFEKLNVSMGTKTMSGREILDDTWHVEMGYSKWVDLVIMFGMIVLYRVLFLVITKSKEKLKPFVAVISGL 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02167 622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 251 IPR027417 -
Vifa6g02167 622 ProSitePatterns ABC transporters family signature. 158 172 IPR017871 GO:0005524|GO:0016887
Vifa6g02167 622 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 16 261 IPR003439 GO:0005524
Vifa6g02167 622 Pfam ABC-2 type transporter 339 554 IPR013525 GO:0016020|GO:0140359
Vifa6g02167 622 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 10 617 - -
Vifa6g02167 622 FunFam ABC transporter G family member 11 14 303 - -
Vifa6g02167 622 SMART AAA_5 44 237 IPR003593 GO:0016887
Vifa6g02167 622 CDD ABCG_EPDR 13 243 - -
Vifa6g02167 622 Pfam ABC-2 type transporter 218 274 IPR043926 GO:0140359
Vifa6g02167 622 Gene3D - 14 336 IPR027417 -
Vifa6g02167 622 Pfam ABC transporter 37 186 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02167 Vifa-Chr6 780053317 780056166 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02167 4 222 Calmodulin-binding Proteins AT2G36910 30.303 1.14e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02167 K05681 - gmx:100790102 999.579