Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02163 ATGGGTGGTAATGAAGGAGAAAAGGGTGGCAATAGCATTACTGTGACATGGGAGAATTTGGAGGCCATTGTTACAAATGGAAAGAATAGAAAACTAATTCTGCAGGGACTTACAGGTTATGCCCAGCCAGGGAAGCTTCTGGCTGTGATGGGTCCTTCAGGCAGTGGCAAATCAACACTCCTTGACGCATTAGCAGGAAGATTGAAATCAAACATACATCAATCAGGGAAGATTCTAATCAACGGCAAAAAACAAACACTGGCTTATGGAACATCAGGCTATGTAACACAAGATGATGCTATGCCGGCAACTTTAACAGCTAGCGAAACTTTATACTACTCAGCTCAACTTCAATTTCCAAACTCAATGTCCATAGCAGAGAAGAAGAGACAAGCAGATATGACACTCAGAGAAATGGGCCTGCAAGATGCTATTAACACAAGGGTTGGAGGGTATGGTTCTAAGGGCCTTAGTGGAGGGCAAAAGAGGAGACTAAGCATTTGCATTGAGATGCTAACACGCCCTAGACTTCTTTTCCTTGATGAACCAACTAGTGGACTTGATAGTGCTGCTTCCTATTATGTTATGAGTAGAATTGCAAGTTTAAGTCTAAGGGATGGTATTCAAAGGACAATTGTTGCATCCATCCATCAGCCTTGTAGTGAAGTTTTTGAACTGTTCCATGACCTCTGTCTTCTTTCCTCTGGGGAGACAGTATATTTTGGTAAAGCTTCTGAAGCAAATCAGTTTTTTGCTTCAAATGGTTTCCCTTGCCCAACTCTCTATAATCCTTCTGATCACTACTTACGGGTCATAAACAAAGATTTCGAACAGGACATTGAAGAAGGCTTTGGTAAGGGAGTTATTACTGAAGAAGCAATTGGTATCCTTGTAAAAGCTTATAAGGCTTCTGAAATGAAAAGTCAAGTTCAGCTTGAAGTGACAAAAATTAGTGAATGCGATTTGGGTGCAATAAGGAATAAGAGGACTCACGCTCCATTTCTGACTCAGTGCATTGTTCTTATAAAAAGATCTTCCCTGCAACTGTATCGTGACATCAGCAACTACTGGTTACGTCTTGTTGTCTTTATTGCAATAGCTATAAGCCTAGGCTCTATCTTCCATCACGTCGGCTCAAGTAGTCGATCTATTCAGGTCAGAGGATCGCTACTTTCATTTTTTATGTCAGTCCTGACTTTCATGACACTTGTTGGTGGATTCTCTCCCTTGATAGAGGAAATGAAGGTGTTTGAACGAGAGAGAATGAACGGGCACTATGGCATTACAGCTTTTCTCATCGGCAACATATTATCTCCTATTCCTTACATGCTAATGATCTCTCTCATTTCTGGAGTAATAGTGTGTTACCTTTCTGGACTACACAGAGGACTAGAGCAATATCTATACTTTGCGTCTATCCTATTTGCCATTATGATGTGGGTTGAAAGCCTTATGATGGTTGTGGGGAGTATCGTCCCAAATTTTGTGATGGGTGTGATCATTGCTGGTGGAGTTGAAGGACTTGCAATTTTAACAGCTGGATTCTATCGACTTCCTGATGATCTTCCAAACCCATTATGGAAGTATCCTTGCTACTACATTTCCTTCCTTACATACGCTTTCCAAGGATCATTCAAGAATGAATTTGAAGGCTTAATGTTTGTTTGGCATCAAAATGGAGGTACCGTAACCGTTAGTGGTAGAGATATACTAACTGATACATGGCATGTGCAAATGGATCATTCTAAGTGGGTTGATCTTGCTATCATGTTTGGAATGATTGTTGTTTATCGAATTTTATTCTTGCTCATCAATAAGATCAAGGAGAAGTCAAAACCTACTGTCCGTACCATAAATGGACCCCGATCAAAAACTTTTTCTAGAACCAATATGCCGGATGAACTCTAA 1908 0.4051 MGGNEGEKGGNSITVTWENLEAIVTNGKNRKLILQGLTGYAQPGKLLAVMGPSGSGKSTLLDALAGRLKSNIHQSGKILINGKKQTLAYGTSGYVTQDDAMPATLTASETLYYSAQLQFPNSMSIAEKKRQADMTLREMGLQDAINTRVGGYGSKGLSGGQKRRLSICIEMLTRPRLLFLDEPTSGLDSAASYYVMSRIASLSLRDGIQRTIVASIHQPCSEVFELFHDLCLLSSGETVYFGKASEANQFFASNGFPCPTLYNPSDHYLRVINKDFEQDIEEGFGKGVITEEAIGILVKAYKASEMKSQVQLEVTKISECDLGAIRNKRTHAPFLTQCIVLIKRSSLQLYRDISNYWLRLVVFIAIAISLGSIFHHVGSSSRSIQVRGSLLSFFMSVLTFMTLVGGFSPLIEEMKVFERERMNGHYGITAFLIGNILSPIPYMLMISLISGVIVCYLSGLHRGLEQYLYFASILFAIMMWVESLMMVVGSIVPNFVMGVIIAGGVEGLAILTAGFYRLPDDLPNPLWKYPCYYISFLTYAFQGSFKNEFEGLMFVWHQNGGTVTVSGRDILTDTWHVQMDHSKWVDLAIMFGMIVVYRILFLLINKIKEKSKPTVRTINGPRSKTFSRTNMPDEL 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02163 635 Pfam ABC transporter 35 185 IPR003439 GO:0005524
Vifa6g02163 635 SMART AAA_5 43 245 IPR003593 GO:0016887
Vifa6g02163 635 Gene3D - 11 254 IPR027417 -
Vifa6g02163 635 Pfam ABC-2 type transporter 217 273 IPR043926 GO:0140359
Vifa6g02163 635 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 15 260 IPR003439 GO:0005524
Vifa6g02163 635 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 12 618 - -
Vifa6g02163 635 ProSitePatterns ABC transporters family signature. 157 171 IPR017871 GO:0005524|GO:0016887
Vifa6g02163 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 251 IPR027417 -
Vifa6g02163 635 Pfam ABC-2 type transporter 336 549 IPR013525 GO:0016020|GO:0140359
Vifa6g02163 635 MobiDBLite consensus disorder prediction 615 635 - -
Vifa6g02163 635 FunFam ABC transporter G family member 11 13 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02163 Vifa-Chr6 779674130 779681718 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02163 33 221 Calmodulin-binding Proteins AT2G36910 28.351 6.44e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02163 K05681 - gmx:100790102 940.643