Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02162 ATGGCTTACCTTCATCCATCTGAAAGTTTTGAAATTAAAACCTCTTCAGAACCATCAGTTCTAGACATTGAGGCCTCCACAAACACACCAGAAGGTAACCATGGTATATGCTTAACATGGAAGGACATATGGGTGAATACAACTGCAAAAGGAAAGAATGGAAGAAGATCAATTCTTCAAGGACTAACTGGTTATGCTAAACCAGGTCAACTCTTAGCCATTATGGGTCCTTCTGGCTGTGGCAAGTCTACACTTCTTGATACTTTAGCAGGGAGATTAGCCACAAACACAAGACAAACTGGGGAGATTCTAATCAATGGTCACAAACAAGAATTGTCTTATGGAACTTCGGCTTATGTCACACAAGATGATACATTACTAACAACCTTAACTGTTAAAGAAGCAGTGTACTATTCAGCTCAACTTCAATTACCTAACACAATGTCCAAATCAGAGAAGAAAGAAAGAGCTGATTTTACAATCAAAGAAATGGGTCTACAAGATGCTACTAACACAAGAATTGGAGGATGGGGTGTTAAAGGCATAAGTGGGGGTCAGAAAAGAAGAGTTAGCATTTGCATTGAGATTCTAACCCGTCCTAGACTTCTTTTTCTTGATGAACCAACTAGTGGACTTGATAGTGCTGCTTCTTACTATGTCATGAAAAGAATTGCTACTTTGGATCATAAAGATGGAATTCAAAGGACTATCATCACTTCTATCCATCAACCTAGTTCTGAAGTTTTTCAACTTTTTGATAACCTTTGTCTTCTGTCTTCCGGTGAAAATGTTTATTTTGGACCTGCTTCTGCTGCATGTGAGTTTTTTGCTTTGAATGGATTTCCTTGTTCTCCTCTCCAAAGTCTACCAGATCATTTACTTAAAACTATAAACAAGGATTTTGATCAGGATACCGAGATAGAAATATCGACAGAAGAAGCAATTAGTATCCTTGTGAGTTCATATAAATCATCTGAAATAAAGAAACATGTTCACGACGAAGTAGCAGTGCTTTCCAAAAAGCAAATAAGATCAATGGACACGAACAAAGGGCATGCAGGGTTCTTTAATCAATGCTTATCTCTTATCAAACGATCATCATTGAACATGTTTCGTGATTTAGGCTATTATTGGTTACGTCTAGGGATATATATTGCACTGGCTTTAAGTTTAGGAACAGTTTTCTATGATTTTGGTACAAGTTATGCGTCAATTAAGGATCGTGGTTCGCTTCTTGCATATATCTCTGGATTCTTAACTTTCATGAGCATTGGTGGATTTCCTTCCTTTGTAGAAGACATGAAGGTATTTCAACTAGAGAGACAAAATGGACATTATGGTGTTGTAGCATATGTGATTGGGAACACATTTTCATCAGTTCCATTTGTTTTCGTGATTTCAATAATTCCAGCAGTTATAACTTATTACCTATGTGGTCTTCAAAAAGGATATGAGCACTTTTTCTTCTTTGCTAGTGTTTTATTTTCAAGTCTAATGCTAGTTGAGAGTCTCATGATGATAGTTGCAAGCATTGTCCCTAACTATCTAATGGGAATCATAACGGGTGCTGGAATTCAAGGAGTCATGATGTTGGTTGGAGGGTTCTTTAAATTGTCACATGATATTCCCAACATATTTTGGAAATATCCATTTCATTATGTTGCATTTCATACCTATGTAAATGAGGGATTGTTCAAGAATGAGTTTGAAGGACTAAGATTTGATATTCCAAATGTACAAGGCGTAAACCGTTCGATTACTGGTGAAGTCGTTTTGACAGATACTTGGCAAATGGACTTGAGTTATTCAAAGTGGGTTGATCTTGCAATTTTGCTTGGGATGATTGTTTTGTATCGTGTTTTGTTTCTTTTTATCATTAAGGGTACAGAGAAGATGAAACCTATTGTTGGATCAATGTTATCTAGCATAGGAGAGTCTTCCAAGACAGTAGTACATGTTGAGAAGCCTGATGCTACTCCTTTGAATGAGCACGTTGTGTAA 2001 0.3683 MAYLHPSESFEIKTSSEPSVLDIEASTNTPEGNHGICLTWKDIWVNTTAKGKNGRRSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGRLATNTRQTGEILINGHKQELSYGTSAYVTQDDTLLTTLTVKEAVYYSAQLQLPNTMSKSEKKERADFTIKEMGLQDATNTRIGGWGVKGISGGQKRRVSICIEILTRPRLLFLDEPTSGLDSAASYYVMKRIATLDHKDGIQRTIITSIHQPSSEVFQLFDNLCLLSSGENVYFGPASAACEFFALNGFPCSPLQSLPDHLLKTINKDFDQDTEIEISTEEAISILVSSYKSSEIKKHVHDEVAVLSKKQIRSMDTNKGHAGFFNQCLSLIKRSSLNMFRDLGYYWLRLGIYIALALSLGTVFYDFGTSYASIKDRGSLLAYISGFLTFMSIGGFPSFVEDMKVFQLERQNGHYGVVAYVIGNTFSSVPFVFVISIIPAVITYYLCGLQKGYEHFFFFASVLFSSLMLVESLMMIVASIVPNYLMGIITGAGIQGVMMLVGGFFKLSHDIPNIFWKYPFHYVAFHTYVNEGLFKNEFEGLRFDIPNVQGVNRSITGEVVLTDTWQMDLSYSKWVDLAILLGMIVLYRVLFLFIIKGTEKMKPIVGSMLSSIGESSKTVVHVEKPDATPLNEHVV 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02162 666 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 38 285 IPR003439 GO:0005524
Vifa6g02162 666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 276 IPR027417 -
Vifa6g02162 666 ProSitePatterns ABC transporters family signature. 182 196 IPR017871 GO:0005524|GO:0016887
Vifa6g02162 666 SMART AAA_5 68 262 IPR003593 GO:0016887
Vifa6g02162 666 FunFam ABC transporter G family member 11 36 321 - -
Vifa6g02162 666 Gene3D - 38 280 IPR027417 -
Vifa6g02162 666 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 31 642 - -
Vifa6g02162 666 Pfam ABC-2 type transporter 358 569 IPR013525 GO:0016020|GO:0140359
Vifa6g02162 666 Pfam ABC transporter 60 210 IPR003439 GO:0005524
Vifa6g02162 666 Pfam ABC-2 type transporter 242 342 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02162 Vifa-Chr6 778934667 778940014 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02162 69 246 Calmodulin-binding Proteins AT2G36910 31.217 2.28e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02162 K05681 - gmx:100794527 898.656