Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02160 ATGACTTCTTTTCTTTCGGCTGTTCCTAATATCCTAGAGATTGAAACCACTAGAGAAGAGGTGAAAACATCAAGCATCATAGCTTCCAAAAGGATGAATAATGGAGGAGAGGAAAATAAGGGAATTTGTTTGAGTTGGAAGGATCTATGGGTAACTGTTTCTGGTTCGAAGAATCAAAGCAAATCGATTCTTGAAGGTTTAACTGGTTATGCAAAACCAGGTCAGGTTTTGGCTATAATGGGTCCTTCTGGTTCTGGAAAATCTACACTTCTTGATGCTTTAGCAGGGAGATTAGGTTCAAACACAAGACAATCAGGAGAGATTCTGATCAATGGCTATAAGCAAGCATTGGCTTATGGAACCTCGGCATATGTTACACAAGATGATACATTATTAACAACCTTAACTGTCAAAGAAGCAGTATACTATTCAGCTCAGCTTCAATTACCTGACACAATGTCTAAACAAGAGAAGAAACAAAGAGCTGATTCTACAATCAGAGAAATGGGTCTTCAAGATGCAACTAACACAAGAATTGGAGGGTGGGGTGTTAAAGGCATAAGTGGGGGTCAGAAAAGAAGAGTCAGCATTTGTATTGAGATTCTAACACATCCTAGTCTTCTTTTTCTTGATGAACCAACCAGTGGACTTGATAGTGCTGCTTCTTACTATGTCATGAAAAGAATTGCTTCCTTAGGCAAAAAAGATGGAATTCAAAGGACTATTATCGCGTCGATCCATCAACCTAGTACCGAAGTTTTTCAACTTTTTCATAATCTTTGTCTTTTGTCTTCTGGTAAAACTGTTTACTTTGGACCTGCTTCCGCCGCGTCTGAGGATATCGAGATTGATTTAGCAGAGATGAGTAGAACGATTTCGACAGAAGAAGCAATTGGTATCCTTGTGACTTCATATACATCATCTGAAATAAACCAAGAAGTTATAAATGAACTAGCAGTACTGTCAAAAAAGGACAACAATTCAACATACAAGAAGAAAAAACATGCTGGCTTTCTTAATCAATGTTTAGTTCTTACTAGAAGATCTTTCGTAAACATGTTTCGTGATCTAGGCTATTATTGGTTACGCCTCGGCATATATATTGCTTTAGCTATAAGTTTGGCCACTGTCTTTAATGATTTGGATAAAAGTTATGGCTCAATTCAAGATAGAGGCTCATTTCTTATGTTTGTGTTTTCATTCCTAACTTTCATGACCATTGGTGGATTTCCTTCTTATGTGGAGGACATGAAGGTATTTGAACGTGAAAGACTAAATGGACATTATGGTGTTAGTGCATATGTGATTGGGAACACAGTTTCATCTCTTCCATACTTGTTAATGGTTTCATTGATTCCAGGAGCTATAGCATACTACCCTTCTGGTCTTCAAAAAGGATATGAACATTTTCTATATTTCATTTGTGCTCTATTTTCATGTCTAATGTTAGTAGAGAGTCTTATGATGATAGTTGCAAGCATTGTTCCTCATTTTCTAATGGGAATCATAACGGGGGCCGGAATTCAAGGAATCATGATGTTGGCTGGTGGGTTCTTTAGATTGCCAAATGATCTTCCAAATCCATTTTGGAGATATCCTATGTTCTACATAGCATTCCATAGGTATGCTTTTCAAGGATCATATAAAAATGAGTTTAAAGGACTAAAGTTTGATAGAGATGATGGATCCCTTAATTACATTAGTGGTGATGAGATTCTAACAAGTAAATGGCATGTGGATATGAGTTACTCAAAGTGGATTGATCTTGGAGTGTTGTTGGCTATGATTGTTTTATATAGAGTTTTGTTTTTGATTATTATCAAAACTACTGAGAAGCTTAAACCTTTTGTTCTATCACTCATGCTAGTGTCTCCAAGGAAAAATATACAAGTTTTGGAGAATACTAGGGCCACTCCTTTACATGTAGAAATTGTATAA 1938 0.3648 MTSFLSAVPNILEIETTREEVKTSSIIASKRMNNGGEENKGICLSWKDLWVTVSGSKNQSKSILEGLTGYAKPGQVLAIMGPSGSGKSTLLDALAGRLGSNTRQSGEILINGYKQALAYGTSAYVTQDDTLLTTLTVKEAVYYSAQLQLPDTMSKQEKKQRADSTIREMGLQDATNTRIGGWGVKGISGGQKRRVSICIEILTHPSLLFLDEPTSGLDSAASYYVMKRIASLGKKDGIQRTIIASIHQPSTEVFQLFHNLCLLSSGKTVYFGPASAASEDIEIDLAEMSRTISTEEAIGILVTSYTSSEINQEVINELAVLSKKDNNSTYKKKKHAGFLNQCLVLTRRSFVNMFRDLGYYWLRLGIYIALAISLATVFNDLDKSYGSIQDRGSFLMFVFSFLTFMTIGGFPSYVEDMKVFERERLNGHYGVSAYVIGNTVSSLPYLLMVSLIPGAIAYYPSGLQKGYEHFLYFICALFSCLMLVESLMMIVASIVPHFLMGIITGAGIQGIMMLAGGFFRLPNDLPNPFWRYPMFYIAFHRYAFQGSYKNEFKGLKFDRDDGSLNYISGDEILTSKWHVDMSYSKWIDLGVLLAMIVLYRVLFLIIIKTTEKLKPFVLSLMLVSPRKNIQVLENTRATPLHVEIV 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02160 645 Pfam ABC-2 type transporter 341 552 IPR013525 GO:0016020|GO:0140359
Vifa6g02160 645 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 44 290 IPR003439 GO:0005524
Vifa6g02160 645 Gene3D - 44 321 IPR027417 -
Vifa6g02160 645 ProSitePatterns ABC transporters family signature. 187 201 IPR017871 GO:0005524|GO:0016887
Vifa6g02160 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 280 IPR027417 -
Vifa6g02160 645 Pfam ABC transporter 66 215 IPR003439 GO:0005524
Vifa6g02160 645 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 289 623 - -
Vifa6g02160 645 SMART AAA_5 73 287 IPR003593 GO:0016887
Vifa6g02160 645 CDD ABCG_EPDR 41 272 - -
Vifa6g02160 645 FunFam ABC transporter family protein-like 44 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02160 Vifa-Chr6 778143012 778146595 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02160 63 275 Calmodulin-binding Proteins AT2G36910 27.982 8.62e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02160 K05681 - gmx:100813462 905.59