Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02159 ATGGAAAACGATGACGTTGATATGGTCGGCGCCGACAACAACGAAGCCCAGGATTTGGATGACATGAAGAAACGGTTGAAGGAAATGGAAGACGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTCGAGAAAGAGATGGGATCCGTCCAAGATCCCGCTAATGCTTCTGCAAGTCAGGTCAATAGGGAGGAAGTTGATTCTCGATCAATCTTTGTGGGCAATGTGGACTATGCATGTACTCCTGAAGAAGTGCAACAGCATTTCCAGTCGTGTGGAACAGTAAACCGAGTCACCATTCGCACTGATAAGTTTGGCCAACCCAAAGGTTATGCTTATGTAGAATTTGTTGAAGTAGAAGCTGTTCAAGAGGCTCTTTCCCTGAATGAATCTGAACTGCATGGACGGCAATTGAAGGTTACTGCTAAGAGGACCAATGTACCTGGGATGAAACAGTTTCGTCCCCGCCGGCCTAGTAATCCTTACATGGGATTTCGAGGCAGAACTCCATATGCACCTCCTTTTGCCTATGCCCCTGCTCCTTATGGATATGGAAAGGTTCCAAGGTTCCGAATGGGGATGCGCTACAGCCCCTACTATTGA 603 0.4793 MENDDVDMVGADNNEAQDLDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPANASASQVNREEVDSRSIFVGNVDYACTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEALSLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYAPPFAYAPAPYGYGKVPRFRMGMRYSPYY 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02159 200 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 139 IPR000504 GO:0003723
Vifa6g02159 200 MobiDBLite consensus disorder prediction 1 20 - -
Vifa6g02159 200 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 18 164 - -
Vifa6g02159 200 SUPERFAMILY RNA-binding domain, RBD 57 169 IPR035979 GO:0003676
Vifa6g02159 200 Coils Coil 12 46 - -
Vifa6g02159 200 SMART rrm1_1 70 141 IPR000504 GO:0003723
Vifa6g02159 200 CDD RRM_II_PABPs 70 141 - -
Vifa6g02159 200 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 145 IPR000504 GO:0003723
Vifa6g02159 200 Gene3D - 7 142 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02159 Vifa-Chr6 776905173 776910393 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02159 70 140 Eukaryotic Initiation Factors Gene Family AT2G36660 34.722 7.54e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02159 K14396 - gmx:100784473 322.783