Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02158 ATGGAAAACGATGACGTTGATATGGTCGGCGCCGACAACAACGAAGCCGATTTGGATGACATGAAGAAACGGTTGAAGGAAATGGAAGACGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTCGAGAAAGAGATGGGATCCGTCCAAGATCCCGCTAATGCTTCTGCAAGTCAGGTCAATAGGGAGGAAGTTGATTCTCGATCAATCTTTGTGGGCAATGTGGACTATGCATGTACTCCTGAAGAAGTGCAACAGCATTTCCAGTCGTGTGGAACAGTAAACCGAGTCACCATTCGCACTGATAAGTTTGGCCAACCCAAAGGTTATGCTTATGTAGAATTTGTTGAAGTAGAAGCTGTTCAAGAGGCTCTTTCCCTGAATGAATCTGAACTGCATGGACGGCAATTGAAGGTTACTGCTAAGAGGACCAATGTACCTGGGATGAAACAGTTTCGTCCCCGCCGGCCTAGTAATCCTTACATGGGATTTCGAGGCAGAACTCCATATGCACCTCCTTTTGCCTATGCCCCTGCTCCTTATGGATATGGAAAGGTTCCAAGGTTCCGAATGGGGATGCGCTACAGCCCCTACTATTGA 600 0.4783 MENDDVDMVGADNNEADLDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPANASASQVNREEVDSRSIFVGNVDYACTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEALSLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYAPPFAYAPAPYGYGKVPRFRMGMRYSPYY 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02158 199 SUPERFAMILY RNA-binding domain, RBD 56 168 IPR035979 GO:0003676
Vifa6g02158 199 MobiDBLite consensus disorder prediction 1 20 - -
Vifa6g02158 199 Gene3D - 6 141 IPR012677 -
Vifa6g02158 199 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 17 163 - -
Vifa6g02158 199 CDD RRM_II_PABPs 69 140 - -
Vifa6g02158 199 SMART rrm1_1 69 140 IPR000504 GO:0003723
Vifa6g02158 199 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
Vifa6g02158 199 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
Vifa6g02158 199 Coils Coil 11 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02158 Vifa-Chr6 776905173 776910393 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02158 69 139 Eukaryotic Initiation Factors Gene Family AT2G36660 34.722 7.40e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02158 K14396 - gmx:100784473 323.168