Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02149 ATGGATAATTTCTGTTGCTTCAGCTCTGTTAGTCAGGCAGTGGGAGGGCGTTCTTCATGCAACTCTGGCAAAGGTAAAAGCAGTCAGTCGCCGGTCAAATATGGATTTAGCCTTGTTAAAGGGAAAGCCAACCATCCAATGGAGGACTATCACGTAGCAAAATTTGTCCATTTCAAAGGACAAGAGCTAGGACTTTTTGCTATATACGATGGACACCTCGGAGACAGTGTACCGTCATATCTCCAAAAGTATCTCTTTTCTAATATCTTGAAGGAAGACGATTTCTGGAACGATCCATTCATGTCCATTTCTAAAGCTTACGAGTCAACAGATCAGGCAATTCTTTCTCACAGTCCTGATTTGGGGCGAGGAGGATCAACTGCCGTGACTGCAATTCTCATAAATAATCAGAAACTCTGGGTCGCCAATGTTGGTGATTCACGAGCAGTTCTGTCGAGGGAAGGGCTAGCTGTACAGATGAGTACTGATCATGAACCTAATACGGAACGTGGCAGCATTGAGAATAGAGGTGGCTTTGTCTCAAACATGCCAGGAGATGTTGCAAGAGTGAACGGGCAGCTTGCAGTTTCTCGAGCATTTGGAGACAAAAACCTCAAAACACACTTGCGATCTGACCCTGACATTCAGTATGCTGATGTTAACCAAGATACCGAGCTTTTGATTCTCGCTAGTGATGGTCTATGGAAGGTAATGGCAAATCAAGAAGCCGTCGATATCGCAAAAAGAATAAAGGATCCACAAAAGGCAGCTAAACAACTAGCTACTGAGGCATTGAACCGAGACAGTAAGGATGATATTTCCTGCGTTGTAGTTCGTTTCAAGGGATGA 849 0.4417 MDNFCCFSSVSQAVGGRSSCNSGKGKSSQSPVKYGFSLVKGKANHPMEDYHVAKFVHFKGQELGLFAIYDGHLGDSVPSYLQKYLFSNILKEDDFWNDPFMSISKAYESTDQAILSHSPDLGRGGSTAVTAILINNQKLWVANVGDSRAVLSREGLAVQMSTDHEPNTERGSIENRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDIQYADVNQDTELLILASDGLWKVMANQEAVDIAKRIKDPQKAAKQLATEALNRDSKDDISCVVVRFKG 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02149 282 CDD PP2Cc 32 280 IPR001932 -
Vifa6g02149 282 ProSiteProfiles PPM-type phosphatase domain profile. 33 280 IPR001932 -
Vifa6g02149 282 FunFam Probable protein phosphatase 2C 39 24 281 - -
Vifa6g02149 282 SMART PP2C_4 29 278 IPR001932 -
Vifa6g02149 282 Pfam Protein phosphatase 2C 42 273 IPR001932 -
Vifa6g02149 282 SUPERFAMILY PP2C-like 28 281 IPR036457 -
Vifa6g02149 282 SMART PP2C_SIG_2 44 280 IPR001932 -
Vifa6g02149 282 PANTHER PROTEIN PHOSPHATASE 27 280 IPR015655 GO:0004722|GO:0006470
Vifa6g02149 282 Gene3D - 16 282 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02149 Vifa-Chr6 773444704 773446683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02149 1 281 PP2C-type Phosphatase Gene Family AT1G22280 72.822 1.44e-151 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02149 K17506 - gmx:100801722 521.161