Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02146 ATGGCGGAGCGTGCTTCTCACGGACTGGCTCCTCGATTAGATATTCAGCAGTTACATCGTGAAGCCCAGCATCGGTGGTTACGTCCTGCAGAAATATTGGAAATTCTTAGTAATTTTAAGTTGTTTCAAATCACGCCAGAACCGCCTAATAGGCCACCGAGTGGATCACTTTTTCTTTTTGATCGGAAGGTTTTGAGATATTTCAGAAAGGATGGACACAACTGGAGAAAGAAGAAAGATGGAAAAACTGTGAGGGAAGCTCACGAAAAGTTGAAGGTGGGAAGTGTTGATGTGTTACACTGCTACTATGCCCATGGAGAAGAGAATGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAAACGGATATGATGCATATAGTATTTGTCCACTACTTGGATGTTAAGATTAACAAGACAAATATTGGTGCAAGTACAGATACTAATGGGGTTACATCAGATTCCTACAAGGGCATATCTGTGTCATCTGGATTTCCTGCAAATTCTGTTAACATGCCTTCAGGAAGTGCGGATTCCATGAGCCCAACAAGCACATTAACTTCTTTATGTGAAGAAGCAGATTCAGAGGATATTCATAAAGCAAGCCCGAGATTTCACACCTTTCATGAGTCGCAAAATCTGGGGAATGGTCCACTGATGGGTAAGATTGATGCTCATTCAAATAATTCATATCTTACACATCCCTTTTCAGGACCTAATTTCCTACCACTTGTTCAAGGGGGTAAATCCAATCCCAGTGATACTACATACATCGAGGGTCAGGGAGCACTCAACATAGTATCCTGGGACAATGACATGGAGAAATCTGCAGGATTGTATGTTGATCCTTCCCCTGTATCGTCTAATTCTATTCCATCAAGTTCAATCAGCAACTTCCTTGAACAAGAACACGCTGTCTTTACTGAAGGAAGGGCCTCACAGTCTCTCCAATCAAATTGGCTGATTCCTTTTGAAGACAATACAGGAGAATTTCCTAAATGGAGCTTTACTCAATCGTTGACTTCGGAATTTGAATCTGATTATTCCGCTGAACTACTGGGAAAAGAAACTAATAATGCAAGTCCAGAAATTGGTTTGGACCCATTTTATTTTAATTATGAACCAAAAGAGCAGCCTGTCCAGCAAAACATGTCAAATGAGCATGCACAATCTCAGGATGCACTGAAATCTGATTTTGAATCTCATGGCGAACCCAATGTCAACAATGCATTGAACATGAAACGTGTTTTTATGGATGCAGAAGAAAGCCTGAGTAAGGTTGATAGCTTCTCTAGGTGGATGTCTACAGCATTTGCATCGGTGGATGATCTGCACATGCAGTCTTCCCTTGGTATTCCATGGGGCACAGATGAATGTGGGAATATGATAGATGATACCTCATTGAACCTTTCCCTATCTCAAGACCAGCTCTTTAGCATACATGATTTTTCACCTAAATGGGCTTATGCTGAATCAGAAATTCAGGTGTTTATTATTGGAACATTTTTGAAGAGTAAACCAAATGTGGAAACATGTAACTGGTCCTGTATGTTTGGGGAAGTTGAAGTTCCAGCTACCGTTTTAGCTAATGGAATTCTATGCTGTCAAGCTCCACCTCTTGAGATTGGACTGATCCCTTTCTACGTAACTTTTTCCAATAGATTTGCTTGTAGTGAAGTTCGGGAATTTGAGTTCAGAGAGGACTCCAATAGAAATGTAGATTTAACAGAATTTTTTAACAGCTCTACTGAAATGACGCTTCATTTGCAACTGGAAGAGTTACTTACTTTGAATTTAGTACATCTTCCAGATCAAGTTTTTGAGGATGATATGGAGAAACGAAACTTGATTCTTAAGCTTATTTCACTGAAAGAGGAAGAGGAACATTTGAGTAATGAAGAGCCAACTGGAGAGATGGATATATCAAAATACATGTTGAAGATGCATACGTTTCACAGGCAGGTTAAGGAAAAGTTGTACTCATGGCTTCTTCACAAAGTAACTGAAACTGGTAAAGGACCTCATGTGATTGGTAAAGATGGGCAAGGTGTATTACATTTAGTTGCTGCTCTTGGTTATGATTGGGCCATATCACCAATTGTAACTTCTGGAGTTAATATCAACTTCCGTGACGTGAATGGATGGACTGCTCTACACTGGGCTGCATCATGTGCCAGGGAACGAACAGTTGGTCTCCTTGTCTCCATGGGTGCAGCTGCTGGAGCCTTGACAGATCCATGTCCAGCATTCCCTTCAGGAAGAACACCTGCAGATCTTGCTTCTAGCTGTGGCCACAAAGGAATTTCAGGTTTTCTTGCCGAGTCATTATTAACTAGTCACCTTGAATCACTCAGAGTGGCTGATGCAAATGAAGATGGTACAAAAGAAAAAGTCGTACAGACGATTTCAGAACGAAGTGCGACACGTGTGCTCTTGGAAGATACACCAGATGTTATCTGCCTTAAGGATTCTCTTGATGCTGTCCGCAATGCTACACAAGCTGCTGATAGAATACATCAAGTATATAGAATGCAATCATTTCAAAGAAAGCAGTTAGCTCAGTATGACGATGATGATGAGTTTGGATTGTCAGATCAGCAGGCTCTTTCTCTTTTAGCTTCTAAGGCTTGCAAATCCACTCATGGGAAAGGTTCAGCAAATGCTGCTGCAGTACAAATACAGAAAAAGTTTCGTGGCTGGACAAAGAGAAAAGAATTCTTGTTCATTCGTGAAAGAGTTGTTAAAATCCAGGCCCACGTAAGAGGTCACCAGGTAAGAAAGAAGTTTAAATCAATCATTTGGTCTGTGGGAATCCTGGAGAAGGTTGTATTACGGTGGAGGCGTAAGGGCAGTGGTTTACGTGGATTTCGACCATATGCCGTAAATAATGTCCCCAACCAACCAAACAACGATCTTGTGAAGGAGGATGATTATGATTTTTTCAAGGAAGGGAGGAAACAGAGTGAAGAAAGGTTCCAAAAGGCTCTTTCAAGGGTTCAGTCCATGGTTCAGTATCCAGAAGCTCGTGCTCAGTACAGACGACTGCTAAATGTAGTAGATGATTTCCGTCACAAGCAGCCATGTAATTTGGGTTTGAAGAATTCAGAAGAAGCCGATAATGGTGTGGAGGATTTGATTGATATTGACATGCTTTTAGATGATGCTAATTATTTACCCATAGAATTGGATTGA 3192 0.4098 MAERASHGLAPRLDIQQLHREAQHRWLRPAEILEILSNFKLFQITPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLETDMMHIVFVHYLDVKINKTNIGASTDTNGVTSDSYKGISVSSGFPANSVNMPSGSADSMSPTSTLTSLCEEADSEDIHKASPRFHTFHESQNLGNGPLMGKIDAHSNNSYLTHPFSGPNFLPLVQGGKSNPSDTTYIEGQGALNIVSWDNDMEKSAGLYVDPSPVSSNSIPSSSISNFLEQEHAVFTEGRASQSLQSNWLIPFEDNTGEFPKWSFTQSLTSEFESDYSAELLGKETNNASPEIGLDPFYFNYEPKEQPVQQNMSNEHAQSQDALKSDFESHGEPNVNNALNMKRVFMDAEESLSKVDSFSRWMSTAFASVDDLHMQSSLGIPWGTDECGNMIDDTSLNLSLSQDQLFSIHDFSPKWAYAESEIQVFIIGTFLKSKPNVETCNWSCMFGEVEVPATVLANGILCCQAPPLEIGLIPFYVTFSNRFACSEVREFEFREDSNRNVDLTEFFNSSTEMTLHLQLEELLTLNLVHLPDQVFEDDMEKRNLILKLISLKEEEEHLSNEEPTGEMDISKYMLKMHTFHRQVKEKLYSWLLHKVTETGKGPHVIGKDGQGVLHLVAALGYDWAISPIVTSGVNINFRDVNGWTALHWAASCARERTVGLLVSMGAAAGALTDPCPAFPSGRTPADLASSCGHKGISGFLAESLLTSHLESLRVADANEDGTKEKVVQTISERSATRVLLEDTPDVICLKDSLDAVRNATQAADRIHQVYRMQSFQRKQLAQYDDDDEFGLSDQQALSLLASKACKSTHGKGSANAAAVQIQKKFRGWTKRKEFLFIRERVVKIQAHVRGHQVRKKFKSIIWSVGILEKVVLRWRRKGSGLRGFRPYAVNNVPNQPNNDLVKEDDYDFFKEGRKQSEERFQKALSRVQSMVQYPEARAQYRRLLNVVDDFRHKQPCNLGLKNSEEADNGVEDLIDIDMLLDDANYLPIELD 1063
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02146 1063 ProSiteProfiles Ankyrin repeat profile. 713 745 IPR002110 GO:0005515
Vifa6g02146 1063 SMART CG_1_2 18 136 IPR005559 GO:0003677
Vifa6g02146 1063 FunFam Calmodulin-binding transcription activator 2 885 933 - -
Vifa6g02146 1063 Pfam IPT/TIG domain 480 553 IPR002909 -
Vifa6g02146 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 887 936 IPR027417 -
Vifa6g02146 1063 Gene3D - 642 787 IPR036770 -
Vifa6g02146 1063 SMART iq_5 885 907 IPR000048 GO:0005515
Vifa6g02146 1063 SMART iq_5 908 930 IPR000048 GO:0005515
Vifa6g02146 1063 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 13 1023 - -
Vifa6g02146 1063 Coils Coil 613 633 - -
Vifa6g02146 1063 MobiDBLite consensus disorder prediction 379 404 - -
Vifa6g02146 1063 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Vifa6g02146 1063 SUPERFAMILY E set domains 480 566 IPR014756 -
Vifa6g02146 1063 SUPERFAMILY Ankyrin repeat 639 773 IPR036770 -
Vifa6g02146 1063 FunFam Calmodulin-binding transcription activator 2 473 569 - -
Vifa6g02146 1063 Gene3D - 886 933 - -
Vifa6g02146 1063 Pfam IQ calmodulin-binding motif 888 906 IPR000048 GO:0005515
Vifa6g02146 1063 Pfam IQ calmodulin-binding motif 912 930 IPR000048 GO:0005515
Vifa6g02146 1063 ProSiteProfiles IQ motif profile. 886 915 IPR000048 GO:0005515
Vifa6g02146 1063 Gene3D Immunoglobulins 473 570 IPR013783 -
Vifa6g02146 1063 ProSiteProfiles IQ motif profile. 909 933 IPR000048 GO:0005515
Vifa6g02146 1063 ProSiteProfiles Ankyrin repeat region circular profile. 713 738 - -
Vifa6g02146 1063 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa6g02146 Vifa-Chr6 772676172 772683636 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02146 1 1040 CAMTA Transcription Factor Family AT5G64220 50.424 0.0 974
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vifa6g02146 CG-1 2.9e-51 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02146 K21596 - gmx:100795682 1506.12