Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02145 ATGGCGGAGCGTGCTTCTCACGGACTGGCTCCTCGATTAGATATTCAGCAGTTACATCGTGAAGCCCAGCATCGGTGGTTACGTCCTGCAGAAATATTGGAAATTCTTAGTAATTTTAAGTTGTTTCAAATCACGCCAGAACCGCCTAATAGGCCACCGAGTGGATCACTTTTTCTTTTTGATCGGAAGGTTTTGAGATATTTCAGAAAGGATGGACACAACTGGAGAAAGAAGAAAGATGGAAAAACTGTGAGGGAAGCTCACGAAAAGTTGAAGGTGGGAAGTGTTGATGTGTTACACTGCTACTATGCCCATGGAGAAGAGAATGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAAACGGATATGATGCATATAGTATTTGTCCACTACTTGGATGTTAAGATTAACAAGACAAATATTGGTGCAAGTACAGATACTAATGGGGTTACATCAGATTCCTACAAGGGCATATCTGTGTCATCTGGATTTCCTGCAAATTCTGTTAACATGCCTTCAGGAAGTGCGGATTCCATGAGCCCAACAAGCACATTAACTTCTTTATGTGAAGAAGCAGATTCAGAGGATATTCATAAAGCAAGCCCGAGATTTCACACCTTTCATGAGTCGCAAAATCTGGGGAATGGTCCACTGATGGGTAATCATAGCCAGTTATCGATTTCAGGACCTAATTTCCTACCACTTGTTCAAGGGGGTAAATCCAATCCCAGTGATACTACATACATCGAGGGTCAGGGAGCACTCAACATAGTATCCTGGGACAATGACATGGAGAAATCTGCAGGATTGTATGTTGATCCTTCCCCTGTATCGTCTAATTCTATTCCATCAAGTTCAATCAGCAACTTCCTTGAACAAGAACACGCTGTCTTTACTGAAGGAAGGGCCTCACAGTCTCTCCAATCAAATTGGCTGATTCCTTTTGAAGACAATACAGGAGAATTTCCTAAATGGAGCTTTACTCAATCGTTGACTTCGGAATTTGAATCTGATTATTCCGCTGAACTACTGGGAAAAGAAACTAATAATGCAAGTCCAGAAATTGGTTTGGACCCATTTTATTTTAATTATGAACCAAAAGAGCAGCCTGTCCAGCAAAACATGTCAAATGAGCATGCACAATCTCAGGATGCACTGAAATCTGATTTTGAATCTCATGGCGAACCCAATGTCAACAATGCATTGAACATGAAACGTGTTTTTATGGATGCAGAAGAAAGCCTGAGTAAGGTTGATAGCTTCTCTAGGTGGATGTCTACAGCATTTGCATCGGTGGATGATCTGCACATGCAGTCTTCCCTTGGTATTCCATGGGGCACAGATGAATGTGGGAATATGATAGATGATACCTCATTGAACCTTTCCCTATCTCAAGACCAGCTCTTTAGCATACATGATTTTTCACCTAAATGGGCTTATGCTGAATCAGAAATTCAGGTGTTTATTATTGGAACATTTTTGAAGAGTAAACCAAATGTGGAAACATGTAACTGGTCCTGTATGTTTGGGGAAGTTGAAGTTCCAGCTACCGTTTTAGCTAATGGAATTCTATGCTGTCAAGCTCCACCTCTTGAGATTGGACTGATCCCTTTCTACGTAACTTTTTCCAATAGATTTGCTTGTAGTGAAGTTCGGGAATTTGAGTTCAGAGAGGACTCCAATAGAAATGTAGATTTAACAGAATTTTTTAACAGCTCTACTGAAATGACGCTTCATTTGCAACTGGAAGAGTTACTTACTTTGAATTTAGTACATCTTCCAGATCAAGTTTTTGAGGATGATATGGAGAAACGAAACTTGATTCTTAAGCTTATTTCACTGAAAGAGGAAGAGGAACATTTGAGTAATGAAGAGCCAACTGGAGAGATGGATATATCAAAATACATGTTGAAGATGCATACGTTTCACAGGCAGGTTAAGGAAAAGTTGTACTCATGGCTTCTTCACAAAGTAACTGAAACTGGTAAAGGACCTCATGTGATTGGTAAAGATGGGCAAGGTGTATTACATTTAGTTGCTGCTCTTGGTTATGATTGGGCCATATCACCAATTGTAACTTCTGGAGTTAATATCAACTTCCGTGACGTGAATGGATGGACTGCTCTACACTGGGCTGCATCATGTGCCAGGGAACGAACAGTTGGTCTCCTTGTCTCCATGGGTGCAGCTGCTGGAGCCTTGACAGATCCATGTCCAGCATTCCCTTCAGGAAGAACACCTGCAGATCTTGCTTCTAGCTGTGGCCACAAAGGAATTTCAGGTTTTCTTGCCGAGTCATTATTAACTAGTCACCTTGAATCACTCAGAGTGGCTGATGCAAATGAAGATGGTACAAAAGAAAAAGTCGTACAGACGATTTCAGAACGAAGTGCGACACGTGTGCTCTTGGAAGATACACCAGATGTTATCTGCCTTAAGGATTCTCTTGATGCTGTCCGCAATGCTACACAAGCTGCTGATAGAATACATCAAGTATATAGAATGCAATCATTTCAAAGAAAGCAGTTAGCTCAGTATGACGATGATGATGAGTTTGGATTGTCAGATCAGCAGGCTCTTTCTCTTTTAGCTTCTAAGGCTTGCAAATCCACTCATGGGAAAGGTTCAGCAAATGCTGCTGCAGTACAAATACAGAAAAAGTTTCGTGGCTGGACAAAGAGAAAAGAATTCTTGTTCATTCGTGAAAGAGTTGTTAAAATCCAGGCCCACGTAAGAGGTCACCAGGTAAGAAAGAAGTTTAAATCAATCATTTGGTCTGTGGGAATCCTGGAGAAGGTTGTATTACGGTGGAGGCGTAAGGGCAGTGGTTTACGTGGATTTCGACCATATGCCGTAAATAATGTCCCCAACCAACCAAACAACGATCTTGTGAAGGAGGATGATTATGATTTTTTCAAGGAAGGGAGGAAACAGAGTGAAGAAAGGTTCCAAAAGGCTCTTTCAAGGGTTCAGTCCATGGTTCAGTATCCAGAAGCTCGTGCTCAGTACAGACGACTGCTAAATGTAGTAGATGATTTCCGTCACAAGCAGCCATGTAATTTGGGTTTGAAGAATTCAGAAGAAGCCGATAATGGTGTGGAGGATTTGATTGATATTGACATGCTTTTAGATGATGCTAATTATTTACCCATAGAATTGGATTGA 3168 0.411 MAERASHGLAPRLDIQQLHREAQHRWLRPAEILEILSNFKLFQITPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLETDMMHIVFVHYLDVKINKTNIGASTDTNGVTSDSYKGISVSSGFPANSVNMPSGSADSMSPTSTLTSLCEEADSEDIHKASPRFHTFHESQNLGNGPLMGNHSQLSISGPNFLPLVQGGKSNPSDTTYIEGQGALNIVSWDNDMEKSAGLYVDPSPVSSNSIPSSSISNFLEQEHAVFTEGRASQSLQSNWLIPFEDNTGEFPKWSFTQSLTSEFESDYSAELLGKETNNASPEIGLDPFYFNYEPKEQPVQQNMSNEHAQSQDALKSDFESHGEPNVNNALNMKRVFMDAEESLSKVDSFSRWMSTAFASVDDLHMQSSLGIPWGTDECGNMIDDTSLNLSLSQDQLFSIHDFSPKWAYAESEIQVFIIGTFLKSKPNVETCNWSCMFGEVEVPATVLANGILCCQAPPLEIGLIPFYVTFSNRFACSEVREFEFREDSNRNVDLTEFFNSSTEMTLHLQLEELLTLNLVHLPDQVFEDDMEKRNLILKLISLKEEEEHLSNEEPTGEMDISKYMLKMHTFHRQVKEKLYSWLLHKVTETGKGPHVIGKDGQGVLHLVAALGYDWAISPIVTSGVNINFRDVNGWTALHWAASCARERTVGLLVSMGAAAGALTDPCPAFPSGRTPADLASSCGHKGISGFLAESLLTSHLESLRVADANEDGTKEKVVQTISERSATRVLLEDTPDVICLKDSLDAVRNATQAADRIHQVYRMQSFQRKQLAQYDDDDEFGLSDQQALSLLASKACKSTHGKGSANAAAVQIQKKFRGWTKRKEFLFIRERVVKIQAHVRGHQVRKKFKSIIWSVGILEKVVLRWRRKGSGLRGFRPYAVNNVPNQPNNDLVKEDDYDFFKEGRKQSEERFQKALSRVQSMVQYPEARAQYRRLLNVVDDFRHKQPCNLGLKNSEEADNGVEDLIDIDMLLDDANYLPIELD 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02145 1055 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 13 1015 - -
Vifa6g02145 1055 SMART CG_1_2 18 136 IPR005559 GO:0003677
Vifa6g02145 1055 Pfam IQ calmodulin-binding motif 904 922 IPR000048 GO:0005515
Vifa6g02145 1055 Pfam IQ calmodulin-binding motif 880 898 IPR000048 GO:0005515
Vifa6g02145 1055 Gene3D - 878 925 - -
Vifa6g02145 1055 Gene3D Immunoglobulins 465 562 IPR013783 -
Vifa6g02145 1055 ProSiteProfiles IQ motif profile. 878 907 IPR000048 GO:0005515
Vifa6g02145 1055 SUPERFAMILY Ankyrin repeat 631 765 IPR036770 -
Vifa6g02145 1055 ProSiteProfiles IQ motif profile. 901 925 IPR000048 GO:0005515
Vifa6g02145 1055 ProSiteProfiles Ankyrin repeat region circular profile. 705 730 - -
Vifa6g02145 1055 Pfam IPT/TIG domain 472 545 IPR002909 -
Vifa6g02145 1055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 879 928 IPR027417 -
Vifa6g02145 1055 Coils Coil 605 625 - -
Vifa6g02145 1055 ProSiteProfiles Ankyrin repeat profile. 705 737 IPR002110 GO:0005515
Vifa6g02145 1055 MobiDBLite consensus disorder prediction 371 396 - -
Vifa6g02145 1055 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Vifa6g02145 1055 FunFam Calmodulin-binding transcription activator 2 465 561 - -
Vifa6g02145 1055 FunFam Calmodulin-binding transcription activator 2 877 925 - -
Vifa6g02145 1055 Coils Coil 1055 1055 - -
Vifa6g02145 1055 SUPERFAMILY E set domains 472 558 IPR014756 -
Vifa6g02145 1055 Gene3D - 634 779 IPR036770 -
Vifa6g02145 1055 SMART iq_5 877 899 IPR000048 GO:0005515
Vifa6g02145 1055 SMART iq_5 900 922 IPR000048 GO:0005515
Vifa6g02145 1055 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02145 Vifa-Chr6 772676172 772683636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02145 1 1032 CAMTA Transcription Factor Family AT5G64220 50.331 0.0 972
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vifa6g02145 CG-1 2.9e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02145 K21596 - gmx:100795682 1493.02