Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02139 ATGGATTCTGCGGTCTCCGTCACCGCGACGGCGCAGATGGTACTTTTCAGAGCACTCCACCGTCATCTATCCGGAGCACCTAATCGCTCGCTCCTCCGCCGAAAACTTAAATTCGCTGTTACTTCCTACAACAATCGCTTCCGCATTCCGTGTTCCTTCACTTCTGTGCCGTTCCACGCGCCGCTCTCACGAACGCCTTGCCGTACGCGCTGCCTTTCGAGCTCAGCTGCTTCTTTTGCCTCTTCCGGTGGCAGTGGAAATGGAGGCGCTGGAGCCGGAAATGGAGGAGGAGGTGACGGTTCTGGAGGCGAGTTTGGAGATGCTAGCATCAAATTGATTGGAGATACGACTCAAGAGCTTTCAACTCTTTCACCCGATGCTATTATTCTTGATGTTTCGGGAATGGTATGCGGAGGATGTGCAGCGTCTGTGAAAAGGATTCTGGAAAGTCAACCACAAGTCTCATCTGTTAGTGTAAATTTAACAACAGAAACAGCAATAGTCTGGCCTGTATCTGAAGCAAAATCTGCACCAAATTGGCAAAAGCAATTAGGGAAGACACTTGCAGAACATTTAACTAGCAGTGGTTTTAATTCTTGCCTTCGAGATTCAACAAGAGAAAATTTCCTACAAATTTTTGAAAGAAAGATGGAAGAAAGAAATAAAAAATTAAAAGAAAGTGGTCGTGAGTTAGCTGTTTCTTGGGCTCTTTGTGCTGCCTGTCTTGTTGGCCATCTCTCCCATCTCTTTGCAGCAAAGGCACCTTGGGTCCATGTATTTCATTCCATCGGGTTTCATGTATCCTTGTGTTTGCTTACGTTACTTGGTCCTGGCCGCCAACTTATCCTTGATGGCTTAAAAAGCCTTTTTAAAAGGGCGCCAAACATGAACAGCTTAGTTGGTCTTGGGGCTTTGTCATCATTCACAGTCAGTTCATTTGCTGTTTTGCTGCCGAAATTGGGTTGGAAGGCGTTTTTTGAGGAACCTATCATGCTGATTGCATTTGTCTTGTTGGGAAGGAATCTTGAACAGAGAGCTAAAATTAAAGCAACCAGTGATATGACAGGACTTCTTAGCATATTGCCATCTAAAGCTCGCCTTCTAGTTAATGGGGAAACAGAGGTTGCCTCAGTTGTTGAAGTTCCTTCTGACAGTCTTTCTGTTGAAGACCAAATTATCATATTACCCGGAGATCGTATTCCAGCTGATGGAATTGTGAGGGCTGGTAGAAGTACTGTAGACGAGTCAAGTTTCACTGGGGAGCCGCTGCCAGTAACAAAAGAACTTGGGAGCGAGGTTGCAGCTGGAAGTATAAATCTAAATGGAACTCTTACAATAGAGGTGCGGAGACCAGGTGGTGAGACTGCTATAGGAGACATTATTCGTCTAGTTGAAGAGGCACAAAGCAGAGAGGCTCCAGTGCAACGGTTGGCCGACAAGGTAGCAGGATACTTCACGTATGGAGTAATGGGAATTTCTGTTACCACATTTACGTTTTGGAGTGTGTTTGGCCCGCAAATTATACCTTCTGCTCTATATCAAGGAAGTGCAGTTTCACTGGCTTTGCAGCTTGCATGTAGTGTTCTGGTTATCGCTTGTCCATGTGCACTTGGGTTAGCCACACCTACTGCTGTGCTGGTTGGAACTTCTCTGGGGGCTAAAAGAGGATTACTGTTGCGTGGTGGAAATATTCTAGAGAAGTTTGCCATGGTAAACACTGTTGTGTTTGACAAAACAGGGACCCTCACGATTGGTAAACCCGTTGTGACAAAGATCGTCACTCCCACATGCATAGAAAATGCAAATTCAAGCCAAACTAAAATAAATGCTTTGTCTGATATTGAAGTTCTGAGGTTAGCAGCTGCTGTAGAATCTAATTCAGTACATCCAGTTGGGAAAGCAATTGTGGATGCTGCTCAGGCAGTTAATTGTCATGATGCCAAGGTAGTAGATGAAACATTCCTAGAAGAACCTGGATCCGGTGTTGTTGCAACTGTAAATAACAAAAAGGTTTCGGTTGGGACGTTGGAATGGATAACCAGACATGGAGTTAACAGCAGTATACATCAAGAAGTGGAGTATAAAAACCAATCATGTGTCTATGTTGGAGTTGATGATACTTTGGCTGGCCAGATTTATTTTGAAGATGAGATCAGGAAAGATGCAAGACATGTTATTGACACATTATCTAAGCAAGATATTGATGTCTACATGCTGTCTGGAGACAAGAGAAATGCAGCTGAATATGTTGCATCTCTTGTTGGGATTCCCAAAACGAAGGTGCTCTCTGAAGTGAAACCAGAGGAGAAAAACAACTTCATAAAGGAACTTCAAAAAGATAAGAATGTTGTAGCTATGGTTGGTGATGGAATTAACGATGCAGCTGCCCTAGCTTCTTCACATATAGGTATTGCATTGGGTGGAGGTGTTGGAGCTGCCAGTGAAGTGTCTTCTATTGTATTGATGCACAACCATCTCTCACAACTGCTTGATGCTTTGGAGCTTAGCAGGCTAACCATGAATACTGTAAAGCAAAATCTTTGGTGGGCTTTTGTATACAATATTGTAGGGATTCCAATTGCAGCTGGAGTGCTATTTCCTGTAAATGGTACCATGCTGACTCCATCAATTGCAGGGGCTCTCATGGGGTTGAGTTCCATCGGCGTAATGACTAACTCATTACTTTTGAGATTCAAGTTTTCCTTAAAGCAAAAACATATACATCGCCCACTGGCAAAGACCAATACCTATGTTGAATCTGATCTGGCTCGCCGAAACAAGAAAATAAAGTATTCAAATTAG 2802 0.4372 MDSAVSVTATAQMVLFRALHRHLSGAPNRSLLRRKLKFAVTSYNNRFRIPCSFTSVPFHAPLSRTPCRTRCLSSSAASFASSGGSGNGGAGAGNGGGGDGSGGEFGDASIKLIGDTTQELSTLSPDAIILDVSGMVCGGCAASVKRILESQPQVSSVSVNLTTETAIVWPVSEAKSAPNWQKQLGKTLAEHLTSSGFNSCLRDSTRENFLQIFERKMEERNKKLKESGRELAVSWALCAACLVGHLSHLFAAKAPWVHVFHSIGFHVSLCLLTLLGPGRQLILDGLKSLFKRAPNMNSLVGLGALSSFTVSSFAVLLPKLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMTGLLSILPSKARLLVNGETEVASVVEVPSDSLSVEDQIIILPGDRIPADGIVRAGRSTVDESSFTGEPLPVTKELGSEVAAGSINLNGTLTIEVRRPGGETAIGDIIRLVEEAQSREAPVQRLADKVAGYFTYGVMGISVTTFTFWSVFGPQIIPSALYQGSAVSLALQLACSVLVIACPCALGLATPTAVLVGTSLGAKRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGKPVVTKIVTPTCIENANSSQTKINALSDIEVLRLAAAVESNSVHPVGKAIVDAAQAVNCHDAKVVDETFLEEPGSGVVATVNNKKVSVGTLEWITRHGVNSSIHQEVEYKNQSCVYVGVDDTLAGQIYFEDEIRKDARHVIDTLSKQDIDVYMLSGDKRNAAEYVASLVGIPKTKVLSEVKPEEKNNFIKELQKDKNVVAMVGDGINDAAALASSHIGIALGGGVGAASEVSSIVLMHNHLSQLLDALELSRLTMNTVKQNLWWAFVYNIVGIPIAAGVLFPVNGTMLTPSIAGALMGLSSIGVMTNSLLLRFKFSLKQKHIHRPLAKTNTYVESDLARRNKKIKYSN 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02139 933 Pfam E1-E2 ATPase 360 555 - -
Vifa6g02139 933 PRINTS Copper-transporting ATPase signature 860 874 - -
Vifa6g02139 933 PRINTS Copper-transporting ATPase signature 558 573 - -
Vifa6g02139 933 PRINTS Copper-transporting ATPase signature 764 781 - -
Vifa6g02139 933 PRINTS Copper-transporting ATPase signature 329 348 - -
Vifa6g02139 933 PRINTS Copper-transporting ATPase signature 281 300 - -
Vifa6g02139 933 NCBIfam copper-translocating P-type ATPase 278 897 - -
Vifa6g02139 933 Coils Coil 210 230 - -
Vifa6g02139 933 CDD HMA 130 186 IPR006121 GO:0046872
Vifa6g02139 933 PANTHER ATP7, ISOFORM B 124 898 - -
Vifa6g02139 933 Gene3D - 346 468 - -
Vifa6g02139 933 SUPERFAMILY Calcium ATPase, transmembrane domain M 330 867 IPR023298 -
Vifa6g02139 933 FunFam Copper-transporting ATPase PAA1 chloroplastic 703 854 - -
Vifa6g02139 933 SUPERFAMILY Calcium ATPase, transduction domain A 378 464 IPR008250 -
Vifa6g02139 933 Pfam haloacid dehalogenase-like hydrolase 571 799 - -
Vifa6g02139 933 SUPERFAMILY HAD-like 573 894 IPR036412 -
Vifa6g02139 933 SFLD C1.7: P-type atpase like 558 837 - -
Vifa6g02139 933 FunFam Copper-transporting ATPase PAA1 chloroplastic 586 718 - -
Vifa6g02139 933 NCBIfam HAD-IC family P-type ATPase 333 596 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa6g02139 933 NCBIfam HAD-IC family P-type ATPase 619 866 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa6g02139 933 ProSitePatterns E1-E2 ATPases phosphorylation site. 577 583 IPR018303 -
Vifa6g02139 933 ProSitePatterns Heavy-metal-associated domain. 132 161 IPR017969 GO:0046872
Vifa6g02139 933 SFLD p-type atpase 558 837 IPR044492 -
Vifa6g02139 933 FunFam Copper-transporting ATPase 1, putative 347 468 - -
Vifa6g02139 933 PRINTS P-type cation-transporting ATPase superfamily signature 414 428 - -
Vifa6g02139 933 PRINTS P-type cation-transporting ATPase superfamily signature 732 742 - -
Vifa6g02139 933 PRINTS P-type cation-transporting ATPase superfamily signature 810 822 - -
Vifa6g02139 933 PRINTS P-type cation-transporting ATPase superfamily signature 575 589 - -
Vifa6g02139 933 PRINTS P-type cation-transporting ATPase superfamily signature 787 806 - -
Vifa6g02139 933 NCBIfam heavy metal translocating P-type ATPase 296 896 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vifa6g02139 933 ProSiteProfiles Heavy-metal-associated domain profile. 126 193 IPR006121 GO:0046872
Vifa6g02139 933 Gene3D - 127 203 - -
Vifa6g02139 933 Gene3D - 586 718 IPR023299 GO:0000166
Vifa6g02139 933 MobiDBLite consensus disorder prediction 80 101 - -
Vifa6g02139 933 Gene3D - 566 837 IPR023214 -
Vifa6g02139 933 Pfam Heavy-metal-associated domain 130 174 IPR006121 GO:0046872
Vifa6g02139 933 SUPERFAMILY HMA, heavy metal-associated domain 128 175 IPR036163 GO:0046872
Vifa6g02139 933 FunFam Copper-transporting ATPase PAA1, chloroplastic 126 201 - -
Vifa6g02139 933 CDD P-type_ATPase_Cu-like 229 898 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02139 Vifa-Chr6 771374709 771394980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02139 278 908 Primary Pumps ATPases AT1G63440 39.482 2.00e-125 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02139 K17686 - gmx:100796210 1419.06