Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02138 ATGTCTCACTTCGGAAGGTCAGGCCCTCCAGACATCTCCGACACCTACTCCCTCCTCGTCCTTAACATCACTTTTCGTACAACCGCCGACGACCTATTTCCGCTCTTTGATAAGTACGGCAAGGTCGTTGACATCTTCATCCCCAAAGATCGAAGAACCGGTGAGTCGAGGGGTTTCGCTTTTGTGCGTTACAAGTATGCTGATGAAGCTTCCAAGGCTGTTGATAGGCTCGACGGAAGAATGGTTGATGGCCGTGAAATAACTGTCCAATTTGCAAAATATGGACCTAATGCTGAGAGGATTCAGAAAGGAAGGATTATTGAAACATCTCCGAGATCAAAGACCTCAAGGAGCCGCAGTCCCAGCAGGAGAAGGCATCGTGATGATTACAGAGACAAGGATTATAGGAGGAGAAGTCGCAGCAGGAGTTATGACAGGCATGAACGTGACAGGTATCGCGGAAGAGACAGGGACAGTCGTCGCCGAAGCAGAAGCCGTAGTGCTAGTCCTGGTTACAAGGGCCGTGGGAGGGGGCGCCATGATGATGAGCGTCATAGTAGAAGCCGGAGCAGATCAGTGGACAGCCGCTCCCCTGCCCGACGCAGTCCTAGTCCTAGAAAGAGCCCTTCTCCTAACAAGATGTCTCACCACGAGGTCGCCATGATGCTTCCCGAAGCCCATCCCCTCGAAATTCAAATGGTGATGAATAAGCTGTTTTTCTTGAAATGTGATGGTATTATCAGAGTCTTGGTAACATTTTATGATCTAAGTGCAGTTTGTTATGATCGGGAAAAGTGA 798 0.495 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIQKGRIIETSPRSKTSRSRSPSRRRHRDDYRDKDYRRRSRSRSYDRHERDRYRGRDRDSRRRSRSRSASPGYKGRGRGRHDDERHSRSRSRSVDSRSPARRSPSPRKSPSPNKMSHHEVAMMLPEAHPLEIQMVMNKLFFLKCDGIIRVLVTFYDLSAVCYDREK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02138 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Vifa6g02138 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Vifa6g02138 265 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 210 - -
Vifa6g02138 265 SMART rrm1_1 17 90 IPR000504 GO:0003723
Vifa6g02138 265 MobiDBLite consensus disorder prediction 122 165 - -
Vifa6g02138 265 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Vifa6g02138 265 CDD RRM_SRSF2_SRSF8 18 90 - -
Vifa6g02138 265 Gene3D - 4 103 IPR012677 -
Vifa6g02138 265 MobiDBLite consensus disorder prediction 174 196 - -
Vifa6g02138 265 SUPERFAMILY RNA-binding domain, RBD 8 102 IPR035979 GO:0003676
Vifa6g02138 265 MobiDBLite consensus disorder prediction 100 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02138 Vifa-Chr6 771328794 771331300 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02138 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 33.750 1.99e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02138 K12891 - twl:119983878 220.705