Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02117 ATGGATGCTTCATCTTTAACCAGGTCAAGTCTAAGCATTTCAAATTCAAAGCCCTTTTTTCATTACGTTCCACAACAAAGACCTTGTCACGTGCACTTTGCAGTTTCATGCAGAGTAAAGAATATGGAGGAAACAAGGAATGGATCAAATTTCTACAAAATGTTATCTGTGAATCCGAAAAACGCCACAACGGAAGAGATAAAGAGAGCTTATAGATCAATGGCACTTCAATATCATCCTGATGTGTGTCATGATCCTTCGATGAAAGAGGAATCAACTAGGATGTTTGTTCGGTTAAATGTGGCTTATGAAACTTTGTCGAATCCTATGCTTCGTGAACAATATGATAGTGAGTTGGGTTTGAGAAGTAGTATGATGAATAATGATGTTGTTGGTGAAGGGATTTGGAGAAGTAGGTGGCAAGAACAAGTGGTTGAGTTGAAGAAAAGGTCTAGTAGACGTATGGAACAAAAAGGAAGGTCTTGGAGTAGCAGAATGAGGACTCAAAACATGAAAGATAGGAACTAA 528 0.3826 MDASSLTRSSLSISNSKPFFHYVPQQRPCHVHFAVSCRVKNMEETRNGSNFYKMLSVNPKNATTEEIKRAYRSMALQYHPDVCHDPSMKEESTRMFVRLNVAYETLSNPMLREQYDSELGLRSSMMNNDVVGEGIWRSRWQEQVVELKKRSSRRMEQKGRSWSSRMRTQNMKDRN 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02117 175 PRINTS DnaJ domain signature 53 71 IPR001623 -
Vifa6g02117 175 PRINTS DnaJ domain signature 91 111 IPR001623 -
Vifa6g02117 175 PRINTS DnaJ domain signature 71 86 IPR001623 -
Vifa6g02117 175 Gene3D DnaJ domain 37 133 IPR036869 -
Vifa6g02117 175 ProSitePatterns Nt-dnaJ domain signature. 96 115 IPR018253 -
Vifa6g02117 175 CDD DnaJ 50 108 IPR001623 -
Vifa6g02117 175 SMART dnaj_3 49 111 IPR001623 -
Vifa6g02117 175 Pfam DnaJ domain 50 116 IPR001623 -
Vifa6g02117 175 ProSiteProfiles dnaJ domain profile. 50 119 IPR001623 -
Vifa6g02117 175 SUPERFAMILY Chaperone J-domain 38 115 IPR036869 -
Vifa6g02117 175 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 32 173 - -
Vifa6g02117 175 MobiDBLite consensus disorder prediction 149 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02117 Vifa-Chr6 765540208 765540735 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02117 52 117 C2H2 Transcription Factor Family AT1G74250 41.176 1.04e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02117 - - gmx:100811478 195.282