Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02111 ATGGAGAACGCGATGAGCAACGGCAAGATGAAGGTTTCGAAGCTGAGGACTCTGAACGAGAATTTTTCGCCGTTGCAGATCGAGTTGGATGAAACGAGAGGACGCTATCTCCAATCAGCGACGATGAGTCCACGTTTTCAACAGTACACCGAGAAATTCGACGCTGGCTCGCCGCTTGCACAGTACTTCTACGCCGGATCTCCGATTTCATCTAAATCCGGTGAGGCCTTCAATTCCCCGCTTTACGGCTCCAGCAAGTATAGGTCTGCGAACAGTAGCTTTGGTTCTCGCGGCAGATTGTCCCTCTCACCGCTTTCTTCAATCGAGAACTTCGAATTGAAGTCGCCGCCGATGTACCGAACGCCAGTGAAGGTGGAAGAGGAAGTTATTGTGATGGATGATATTCAGGTGAGGCCGATGTTCGGAGGAAAGAGCGGAAGGTCATCATCGTCTTCTTCCAGTAGGGGCTCCTCTTCCTCTTCTTCGTCCAACAAGAGTTTGTTTAAGGCGGAGATTTGCAGAGCGTGGGAAGAATCTGGAAACTGCCGCTTCAATTCCAAATGCCAGTTTGCTCACGTCAGAGAAGAGCTTCATCCAGGTCGTTTCTCCATGATGAACAAATTTGAGGCACAGATGGGCAAAATTTCTATTAGACCAGGACCGTCCATTTATAGCCCAAATACCCGTACTATTCAAGAACATCAAGAAGTAGCTGAACCTGAACCTGAACCTGAATGTGTCGTCACAAGACCCATAATAATATCACAACCAACTTCACCTGAACACCGTCGCATGCACGCCAATTCCAACACCATCAGTGACTGGTCACCTCTGGATGATGGCATTGAGTGTTTCCTCCCAACTTGTTTGGATAGAGTTCCCTCGAGGAAGGAAGTTGATGCACATATTTTTGGTATTCTTAATCAGCCGACTTCTAAAAGAAGACTACCAGTATTCGCGGCTCTTTGCTAG 972 0.4794 MENAMSNGKMKVSKLRTLNENFSPLQIELDETRGRYLQSATMSPRFQQYTEKFDAGSPLAQYFYAGSPISSKSGEAFNSPLYGSSKYRSANSSFGSRGRLSLSPLSSIENFELKSPPMYRTPVKVEEEVIVMDDIQVRPMFGGKSGRSSSSSSSRGSSSSSSSNKSLFKAEICRAWEESGNCRFNSKCQFAHVREELHPGRFSMMNKFEAQMGKISIRPGPSIYSPNTRTIQEHQEVAEPEPEPECVVTRPIIISQPTSPEHRRMHANSNTISDWSPLDDGIECFLPTCLDRVPSRKEVDAHIFGILNQPTSKRRLPVFAALC 323
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02111 323 ProSiteProfiles Zinc finger C3H1-type profile. 167 195 IPR000571 GO:0046872
Vifa6g02111 323 SMART c3hfinal6 167 194 IPR000571 GO:0046872
Vifa6g02111 323 SUPERFAMILY CCCH zinc finger 166 198 IPR036855 GO:0046872
Vifa6g02111 323 PANTHER CCCH ZINC FINGER/TIS11-RELATED 73 207 IPR045877 GO:0003729
Vifa6g02111 323 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 168 193 IPR000571 GO:0046872
Vifa6g02111 323 MobiDBLite consensus disorder prediction 140 164 - -
Vifa6g02111 323 Gene3D - 159 199 - -
Vifa6g02111 323 MobiDBLite consensus disorder prediction 143 164 - -
Vifa6g02111 323 FunFam zinc finger CCCH domain-containing protein 15-like 161 200 - -
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02111 164 199 C3H Transcription Factor Family AT1G68200 44.444 7.57e-06 45.1
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa6g02111 zf-CCCH 1.2e-07 CL0537