Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02108 ATGGGTGATAACAATAATATTAACAACAATGTTAATCTTCCACCAGGGTTTCGATTTTATCCAACTGATGAAGAACTTGTGGTCCATTTTCTTCATAGAAAGGCTTCTCTTTTACCTTGTCATCCAGATGTTATCCCTGATCTTGACCTCTACCCCTTTGATCCATGGCAACTTCAAGGTAGGGCTTTGGAAGAGGGAAATCAATGGTATTATTATAGTAGAAGGACACAAAATAGAATTACTAACAATGGTTATTGGATGCCAATGGGAATGGAAGAACAAGTTGTGACAAGTTCAAGCAATAAGAGAGTTGGTGTGAAGAAATATTATGTTTTTCTTATTGGCGATGCACCTAATGGTAGCAAAACTAATTGGATAATGCAAGAGTATCGTCTTTCTGATTCCGCTTCTTCTTCTTCAAGATCATCGTCCAAAAGAAAATCACATCCAAAATCAGAACATAGTAGGTGGGTGATATGTCGAGTTTATGAGCGCGATGAAGATGACGGTGAAGATGGAGATGGAATTGAATTATCATGTTTAGATGAAGTTTTCTTATCATTGGATGATCTTGATGAAGTAAGCTTGCCAAATTAG 597 0.3685 MGDNNNINNNVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLDLYPFDPWQLQGRALEEGNQWYYYSRRTQNRITNNGYWMPMGMEEQVVTSSSNKRVGVKKYYVFLIGDAPNGSKTNWIMQEYRLSDSASSSSRSSSKRKSHPKSEHSRWVICRVYERDEDDGEDGDGIELSCLDEVFLSLDDLDEVSLPN 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02108 198 Pfam No apical meristem (NAM) protein 14 132 IPR003441 GO:0003677|GO:0006355
Vifa6g02108 198 MobiDBLite consensus disorder prediction 136 155 - -
Vifa6g02108 198 SUPERFAMILY NAC domain 9 164 IPR036093 GO:0003677|GO:0006355
Vifa6g02108 198 Gene3D NAC domain 22 169 IPR036093 GO:0003677|GO:0006355
Vifa6g02108 198 FunFam NAC domain-containing protein 104 22 168 - -
Vifa6g02108 198 ProSiteProfiles NAC domain profile. 13 165 IPR003441 GO:0003677|GO:0006355
Vifa6g02108 198 PANTHER NAC TRANSCRIPTION FACTOR 56 13 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02108 Vifa-Chr6 761508285 761509086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02108 1 166 NAC Transcription Factor Family AT1G61110 41.573 7.01e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa6g02108 NAM 7.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02108 - - gmx:100788893 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g02108 6 761508285 761509086 Vifa6g02108 6 761508285 761509086 ECH