LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa6g02104	ATGTCAGATGAAGATGAGTTCCGTTGTTTTGTTGGTGGCCTTGCATGGTCAACATCGGATAGAAAGTTAAAGGATACATTTGAAAAATTTGGCAAGCTTACGGAGGCTAAGGTGGTTGTTGACAAATTCTCTGGACGTTCTCGTGGTTTTGGATTTGTCACATTTGATGACAAGAAAGCAATGGAAGATGCTATTGATTCTATGAATGGGATAGATTTAGATGGCCGAACTATTACAGTCGACAAAGCCCAACCTCACCAAGGATCAGCTAGAGATGCCAGAGATGACGGTGATCGTTACCGAGAACGTGGTCGTGATCGTGGTGATCGTGACCGTGACCGTGACCGAGGTGGGCGAGGATCCAGTGACGGAGGATGCTTCAATTGTGGTAAACCTGGTCATTTTGCTAGGGAGTGCCCTAGTGAAGGGGGAAGAGGAGGGAGGTATGGTGGTGGCAGAGAAAGTAGATACGGTGGAAGCGGTGGTGGTGGTCACTATGGTCCAGATAGAAACGGAGATCGTTATTCTGGAGGTCGTAGCAGGGACGCGGGTAGTCGTGGAGATTCTGGAAGTGATCGTTACTCCCGTGATCGTGATCGTGCTGGACCATATGAACGACGTGGATCTGGAGGCTTTCGTTGA	642	0.4875	MSDEDEFRCFVGGLAWSTSDRKLKDTFEKFGKLTEAKVVVDKFSGRSRGFGFVTFDDKKAMEDAIDSMNGIDLDGRTITVDKAQPHQGSARDARDDGDRYRERGRDRGDRDRDRDRGGRGSSDGGCFNCGKPGHFARECPSEGGRGGRYGGGRESRYGGSGGGGHYGPDRNGDRYSGGRSRDAGSRGDSGSDRYSRDRDRAGPYERRGSGGFR	213

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa6g02104	213	SUPERFAMILY	Retrovirus zinc finger-like domains	111	145	IPR036875	GO:0003676\|GO:0008270
	Vifa6g02104	213	MobiDBLite	consensus disorder prediction	75	213	-	-
	Vifa6g02104	213	CDD	RRM2_NsCP33_like	8	83	-	-
	Vifa6g02104	213	SUPERFAMILY	RNA-binding domain, RBD	3	115	IPR035979	GO:0003676
	Vifa6g02104	213	ProSiteProfiles	Zinc finger CCHC-type profile.	126	141	IPR001878	GO:0003676\|GO:0008270
	Vifa6g02104	213	PANTHER	GLYCINE-RICH RNA-BINDING PROTEIN RZ1A	1	210	-	-
	Vifa6g02104	213	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	7	85	IPR000504	GO:0003723
	Vifa6g02104	213	SMART	rrm1_1	8	81	IPR000504	GO:0003723
	Vifa6g02104	213	SMART	c2hcfinal6	125	141	IPR001878	GO:0003676\|GO:0008270
	Vifa6g02104	213	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	10	79	IPR000504	GO:0003723
	Vifa6g02104	213	Gene3D	-	2	121	IPR012677	-
	Vifa6g02104	213	MobiDBLite	consensus disorder prediction	87	120	-	-
	Vifa6g02104	213	Pfam	Zinc knuckle	125	141	IPR001878	GO:0003676\|GO:0008270
	Vifa6g02104	213	Gene3D	-	122	182	-	-
	Vifa6g02104	213	MobiDBLite	consensus disorder prediction	172	206	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa6g02104	Vifa-Chr6	760999476	761000409	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa6g02104	5	84	Eukaryotic Initiation Factors Gene Family	AT4G34110	34.940	7.47e-08	50.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa6g02104	-		-	gmx:100815224	226.868