Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02092 ATGGAGAGTATAAGTAGTATATGGCAAGGTTTGAAACCAGACGTGCTAATGGTGTTAGTCCAGATTGCATATGCTGCGGTGACTATAATATACAAGCTCGCAATAAATGATGGAATGAACATGAGAGTTGCCTCAGCATATCGCCTCATTTGTGCATCCGTTTTCACTATCCCAGTTGCTCTTGTTTTTGATAGGAAGAAGAAAGAAAAGATTACTTGGAGTGTGCTTTCTAAGACATTTCTATGTGGATTGTTTGGCGGAAGTTTGTCTCTAAACCTTTATCTTGAAGCACTGGCTTTGACGTCAGCAACATTTATGTTGGTCGTCTTCAACTTAATTCCAGCCATTACGTTCATCATGGCTGTGTGTTTTGGAATGGATAAATTTAATTTGAAGGTGGTGGAAGGAAAGGCCAAGGTTATAGGAACATTACTAGGAATTAGTGGTGCAATGTTGATGATTTTTTTCAAAGGTGTAGAAATTCATATTTGGTCTTCCAATATCAACCTTTTGCATCCACATCACAACCAAAATGAACAAATGGCATCTCAGCATTCTGACATTCTTAAAAAATTGTTGGGTGTTTCATTTGCACTAGCCACCGCTTGCTCTTTCTCGTTGTGGTATATTATTCAGGCTAAGTTGAATGAGGAATACTCAAGTCATCACTCTAGTGCAGCTTTAATATCCATAATGGGAGCCTTTCAAGCAACGGCTATTGCTCTTTGTGTTGAAAAAGATTGGAACCAATGGAAGCTTGGAAACAACCTCAGTATTCTTGCCGTTATTTATCCAGGAATTGTGACCTCTGGATTAGTTGTTGTCGCTACGGCTTGGTGCATAAAGATGAGGGGTCCTCTATTTGCATCTATTTTCAGCCCTTTACAACTCTTTCTTGTAGTTATAGCTGCTTATTTCATGTTGGATGAGAAATTATATTTGGGAAGTATGCTTGGAGCATTGGTGATTGTGTGCGGTCTCTATGCAGTACTTTGGGGTCAAAGCAAAGAAATGAAAAATAAAATGAAGATATTAGAAATCACAAGAATGTCTGAAAATGATGAGCCTGTCGTTATTTCCATGCCTGTTTCTCATGATAGGGTCATCCAAAGCTATCAAAGTTCAGCCATTACTAAAGAGAATGTTGTTAATGATCAATGA 1161 0.3833 MESISSIWQGLKPDVLMVLVQIAYAAVTIIYKLAINDGMNMRVASAYRLICASVFTIPVALVFDRKKKEKITWSVLSKTFLCGLFGGSLSLNLYLEALALTSATFMLVVFNLIPAITFIMAVCFGMDKFNLKVVEGKAKVIGTLLGISGAMLMIFFKGVEIHIWSSNINLLHPHHNQNEQMASQHSDILKKLLGVSFALATACSFSLWYIIQAKLNEEYSSHHSSAALISIMGAFQATAIALCVEKDWNQWKLGNNLSILAVIYPGIVTSGLVVVATAWCIKMRGPLFASIFSPLQLFLVVIAAYFMLDEKLYLGSMLGALVIVCGLYAVLWGQSKEMKNKMKILEITRMSENDEPVVISMPVSHDRVIQSYQSSAITKENVVNDQ 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02092 386 Pfam EamA-like transporter family 12 154 IPR000620 GO:0016020
Vifa6g02092 386 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020
Vifa6g02092 386 PANTHER WAT1-RELATED PROTEIN 15 343 IPR030184 GO:0016020|GO:0022857
Vifa6g02092 386 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 157 - -
Vifa6g02092 386 SUPERFAMILY Multidrug resistance efflux transporter EmrE 248 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02092 Vifa-Chr6 758467620 758469210 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02092 11 355 Nodulin-like Gene Family AT1G25270 40.000 3.45e-91 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02092 - - gmx:100803545 464.922