Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02088 ATGGCCAAGAACATCCTCAAAACTCCAGCACTTCTTCAGTACATCCTTGAAACAAGTTCATATCCAAAAGAACACGAACAATTGAAGCAACTTAGAGAGACAACAATCCAAAAATACGGCAAAATGAGTGTAATGAATGTGCCTTTGGATGAAGCACAATTCATATCTATGCTTCTGAAAATCATGAATGCTAACAAAACATTGGAAATTGGAGTTTTCACTGGTTATTCTTTTCTTACTACTGCCCTTGCTCTTCCTCCTAACGGCAAGGTAATTGGAATCGATATGGATCGAGAAGCCTACGAGACGGGATTGCCCTTCATTCAGAAGGCAGAAGTCGAGCACAAAATTGATTTTATCCACACTGATGCATTTTCAGGCCTCAACGGCCTTATTGATGGAAAACACGAAGAGTCGTTTGATTATGCATTTGTGGATGCTGACAAGGAAAACTTCACAAAGTATCATGAGGTGTTATTGAAACTGGTAAGAAAGGGTGGAATAATTGCATATGACAATACATTAAGGTCTGGTTCCGTGGCGATGTCTGAGGACGATGAAATGGATGATAACACAAAGCGAAAAAGAAAAATTGCAATTGAATTCAACAACTATATTGCAAATGATACTCGCGTTGAGTCAACAATCGTTTCTATCGGGGATGGTGTAACTCTCTGCCGAGTTCTGTAA 690 0.3942 MAKNILKTPALLQYILETSSYPKEHEQLKQLRETTIQKYGKMSVMNVPLDEAQFISMLLKIMNANKTLEIGVFTGYSFLTTALALPPNGKVIGIDMDREAYETGLPFIQKAEVEHKIDFIHTDAFSGLNGLIDGKHEESFDYAFVDADKENFTKYHEVLLKLVRKGGIIAYDNTLRSGSVAMSEDDEMDDNTKRKRKIAIEFNNYIANDTRVESTIVSIGDGVTLCRVL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02088 229 Pfam O-methyltransferase 17 227 IPR002935 GO:0008171
Vifa6g02088 229 CDD AdoMet_MTases 68 171 - -
Vifa6g02088 229 PANTHER O-METHYLTRANSFERASE-RELATED 3 228 - -
Vifa6g02088 229 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 8 228 IPR029063 -
Vifa6g02088 229 Gene3D Vaccinia Virus protein VP39 1 228 IPR029063 -
Vifa6g02088 229 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 4 229 IPR002935 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02088 Vifa-Chr6 758226646 758227851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02088 3 229 Monolignol Biosynthesis Gene Families AT1G67990 54.626 6.27e-87 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02088 K00588 K13272 gmx:100813350 342.813