Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02080 ATGACAGTGTTATGTCTTCCTTTATTGAAGATAAGGAAGTTGAAGGGTCTAAAACAAAAGAAAGCTCATTTGATAGAGATCCAAGTTAACGGTGGAACAATAGTCCAAAAGGTGGACTATTCATATAGTTTCTTTGAAAAGCAAGTCCCTGTTGATGCTGTTTTTCAGAAGGATGAGATGATTGATATCATTGGAGTAACTAAAGGTAAAGGTTATGAAGGTGTGGTAACTCGTTGGGGTGTGACCCGCCTTCCACGGAAGACACACAGAGGTCTAAGGAAGGTTGCTTGTATTGGTGCTTGGCACCCTGCTCGTGTTTCTTTCACAGTTGCCAGGGCTGGTCAGAATGGATACCATCACCGTACTGAATTGAACAAGAAGATCTACAAGGTTGGCAAGACTGACCAAGAGTCGCACACAGCCATCACAGAATTTGACAGGACTGAGAAGGATATTAGTCCTATGGGTGGATTTCCTCATTATGGTATAGTGAAGCACGACTATCTTATGATGAAGGGAGGCTGTATTGGACCAAAGAAGCGGGTTGTGACACTTCGTCAGTCACTACTGAAGCAGACATCTCGGTTGGCTCTTGAAGAGATTAAGCTGAAGTTCATTGACACCTCTTCCAAGTTTGGACATGGTCGCTTCCAGACTACTCAGGAGAAACAGAAGTTTTATGGTCGTTTGAAAGCCTAG 699 0.4335 MTVLCLPLLKIRKLKGLKQKKAHLIEIQVNGGTIVQKVDYSYSFFEKQVPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKVGKTDQESHTAITEFDRTEKDISPMGGFPHYGIVKHDYLMMKGGCIGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKQKFYGRLKA 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02080 232 Gene3D Translation factors 51 191 - -
Vifa6g02080 232 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 10 227 IPR045077 GO:0003735|GO:0005840|GO:0006412
Vifa6g02080 232 Pfam Ribosomal protein L3 10 213 IPR000597 GO:0003735|GO:0005840|GO:0006412
Vifa6g02080 232 FunFam 60S ribosomal protein L3 69 117 - -
Vifa6g02080 232 SUPERFAMILY Translation proteins 9 213 IPR009000 -
Vifa6g02080 232 Gene3D Ribosomal protein L3, domain 3 69 117 IPR044892 -
Vifa6g02080 232 FunFam Ribosomal protein L3 108 232 - -
Vifa6g02080 232 ProSitePatterns Ribosomal protein L3 signature. 55 78 IPR019926 -
Vifa6g02080 232 Gene3D - 10 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02080 Vifa-Chr6 756578932 756579730 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02080 3 230 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 82.018 2.93e-143 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02080 K02925 - csv:101214304 423.705