Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02073 ATGGAAACTAATCTTTCATTGAAGATAGATAGTAATGATTTCGAGCAAGAAGTTGAAAATCATGAACATGTTAAAGAAGATGAGAAAGATGAAGTTCATGAAACTACAGCTGGTGAAATAGAAGATGATGATGCTTCACTTTCTTTGCAAGATAACACAAAAATAAAAGAGTTAAGTGCTTTAGAAATGGAGATGGAAAGTATGAAAGAAGAAAACAAAGCATTGAGGAAAGTGGTGGAACAAACAATGAAAGATTACTATGATCTGCAAACAAAATTTTCAGCCATCCAAGAAAATAATAATAATAAAAGAAAGGATCATCATCAACTTTCTCTCTCACTACAAGACAATAATGCAACCACAAGTGGTGAAGGGCCATCAAGATTAATTCATGAGATCTTTAGTAAAAATATTCAAAGAGCTTCATCACCAATAAGACTGAGCAATAGTGATGATAGTATAAGTGAGAGTGATTTGGGATTATCACTAAGGTTGCAAACAAGGACATGTGAAAAAGATATTGAAGAAAATAAAGAAGGAAAAAAAGAAGAATTGGCAGGTTTTGAGTCAGTGCAGAATAAATTTCAGAGAGTGCATGAGTTGCCTGGTATTACTACTCATCCTGCTTATTCCCCTCCTAATAGAAAGGCTAGGGTTTCTGTTAGAGCAAGATGTGAAACTGCCACAATGAATGATGGGTGTCAATGGAGAAAATACGGACAAAAAATTGCTAAAGGAAATCCATGTCCACGAGCCTATTATCGTTGTACTGTAGTTCCAGGTTGCCCGGTTAGAAAACAGGTGCAAAGATGTATAGATGACATGTCTATACTAATTACAACATATGAAGGAACACATAACCATCCACTACCTGTTGGTGCAACTGCTATGGCTTCAACAGCTTCAGCAGCAGCTTCATTTATGTTACTAGATTCAAGCAATCTCAATTCAGATTATGGTTACACATCTCAACAAACCTTTAACCCTTACATTAATAACACGTTCCACCATCCTTTAAACCCGTCTTCAAATATTCGAAACATAAACCCCAATGATCCATCACAAGGGATTGTTCTTGATCTCACCAACAACAATAATCTCAACGAACCGCGGCGTTTTTCTATGGCAGGTAGCTCCAGCTCCAGCTCCATCGCTACCGATCAACCTCGTTTTCCTTGGTTGCAAAACAAATTTCAACAGAATAGTAGTTCTAGTAGTGCTAATATTGGAATGAACACTTTTCAAAACCCTAGAGTACCATTGGATATTCATGATAGAATTTGGAAAGGATCAGAAGAAAGTAGTAATACTAATAACAATGTGTCTGCAATTGCATCAGATCCTAAGTTTAGGCTTGCTGTTGCAGCTGCAATTTCATCACTCATGAATAAAGAAAGCAACAACACTACTACTACTACTCATGGTAGCAACAATTAG 1437 0.364 METNLSLKIDSNDFEQEVENHEHVKEDEKDEVHETTAGEIEDDDASLSLQDNTKIKELSALEMEMESMKEENKALRKVVEQTMKDYYDLQTKFSAIQENNNNKRKDHHQLSLSLQDNNATTSGEGPSRLIHEIFSKNIQRASSPIRLSNSDDSISESDLGLSLRLQTRTCEKDIEENKEGKKEELAGFESVQNKFQRVHELPGITTHPAYSPPNRKARVSVRARCETATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVVPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSSNLNSDYGYTSQQTFNPYINNTFHHPLNPSSNIRNINPNDPSQGIVLDLTNNNNLNEPRRFSMAGSSSSSSIATDQPRFPWLQNKFQQNSSSSSANIGMNTFQNPRVPLDIHDRIWKGSEESSNTNNNVSAIASDPKFRLAVAAAISSLMNKESNNTTTTTHGSNN 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02073 478 MobiDBLite consensus disorder prediction 12 40 - -
Vifa6g02073 478 Gene3D WRKY domain 215 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa6g02073 478 Coils Coil 58 85 - -
Vifa6g02073 478 Pfam WRKY DNA -binding domain 231 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g02073 478 SUPERFAMILY WRKY DNA-binding domain 223 291 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa6g02073 478 MobiDBLite consensus disorder prediction 1 49 - -
Vifa6g02073 478 Coils Coil 11 31 - -
Vifa6g02073 478 MobiDBLite consensus disorder prediction 102 124 - -
Vifa6g02073 478 ProSiteProfiles WRKY domain profile. 225 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g02073 478 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 33 468 IPR044810 GO:0003700
Vifa6g02073 478 FunFam probable WRKY transcription factor 31 215 292 - -
Vifa6g02073 478 SMART WRKY_cls 230 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02073 Vifa-Chr6 754958688 754960709 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02073 1 356 WRKY Transcription Factor Family AT1G68150 46.032 1.45e-82 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa6g02073 WRKY 3.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02073 - - gmx:100820209 536.569