Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02071 ATGGAGTGGATGATGCGAAAGACCAAAACGAAGAAGAAGCCGCCTCGATTGGAGCGACTCAACGCCAAAAAGAACATCAGTTACCAACTCCCCGTCACCACCACCGTCCCATCTCCAACTCCATCTCCCTCCGACGAAGAAACCAGTCTCCGTGTATTGGGAATCGACGGCGAATTTGACCGTATCTTTCAGAGTTTGGGCCTTTCTGGTCCCGAGGATTTCTCTATCCCAACGCAAGATTGGGAAGCGCGGAAGGTTCGCTCTGCTAATCTTGCTTCAATTTCAGTTTCTGAGGATTCTGCTGTTGTGATTGTTGGGGATTCTCCTTCTTCTTCGGGGGAACATGGTGTTAGGGGTGTTGTTGATCCGCTCAGAAACGGTGAAAGGAGTGTGCTTTTTACCGATTCGGGTTCTTTCACTACTTCGCATGATTATGATAGTGATGGTGGTGGGGAGAGAACGGTGTTTCCTTATGGGTGGCTTAAACCCACTTTTTCTTCGTGGCAAAAGGGTGCCATTCTGGGAAAGGGTTCTTTTGGAACGGTTTATGAATGCCTCACCGAGGATGGATACTTTTATGCGGTGAAAGAGGTGTCTTTGTTGGATGATGGTAACCAGGGAAGACAAAGCATTTTCCAACTTCAGCAGGAAATATCTCTTTTGAGTAGGTTTCAACATGAGAACATAGTTCGATATTATGGCTCAGACAAGAATGAAAGCACACTGTATATATTCCTTGAGCTTGTGTCAAAAGGGTCATTAGCCAGTCTTTATCAAAGCTATCACCTAAATGATTCTCAAGTTTCTGCATACACAAGACAGATTTTAGATGGCTTGAAGTATCTTCATGAAAATGATGTGGTCCACAGGGATATCAAGTGTTCTAATATACTGGTTGATGTAAATGGTTCAGTCAAGCTTGCCGATTTTGGGTTAGCAAAGGCAACAAAATTAAATGATGTTAAATCCAGCAAAGGCTCCCCATACTGGATGGCTCCTGAGGTTGTTAACTTAAGAAACCAAGGTTACGGGCTAGCGGCGGATATATGGAGCTTAGGATGTACGGTTTTAGAGATGTTGACGAGGCAGCCACCTTACTCTGAATTAGAAGGAATGCAAGCAATATTTCGGATTGGTAGGGGTGAACTTCCACCGATTCCTGAATCTCTATCTAATGATGCCCGAGATTTCATTCTTAAATGCTTACAAGTTAACCCAAGTAAACGCCCAACTGCAGCTCAGCTATCAAATCATCCATTTCTAAGGAGACGATTAAGTGCAGGTTCTCCACGTATTAATAGTATTGTTCAGCCTTAA 1317 0.4396 MEWMMRKTKTKKKPPRLERLNAKKNISYQLPVTTTVPSPTPSPSDEETSLRVLGIDGEFDRIFQSLGLSGPEDFSIPTQDWEARKVRSANLASISVSEDSAVVIVGDSPSSSGEHGVRGVVDPLRNGERSVLFTDSGSFTTSHDYDSDGGGERTVFPYGWLKPTFSSWQKGAILGKGSFGTVYECLTEDGYFYAVKEVSLLDDGNQGRQSIFQLQQEISLLSRFQHENIVRYYGSDKNESTLYIFLELVSKGSLASLYQSYHLNDSQVSAYTRQILDGLKYLHENDVVHRDIKCSNILVDVNGSVKLADFGLAKATKLNDVKSSKGSPYWMAPEVVNLRNQGYGLAADIWSLGCTVLEMLTRQPPYSELEGMQAIFRIGRGELPPIPESLSNDARDFILKCLQVNPSKRPTAAQLSNHPFLRRRLSAGSPRINSIVQP 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02071 438 Pfam Protein kinase domain 169 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02071 438 FunFam Mitogen-activated protein kinase 1, putative, expressed 166 433 - -
Vifa6g02071 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 287 299 IPR008271 GO:0004672|GO:0006468
Vifa6g02071 438 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 109 429 - -
Vifa6g02071 438 ProSitePatterns Protein kinases ATP-binding region signature. 174 196 IPR017441 GO:0005524
Vifa6g02071 438 SMART serkin_6 168 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02071 438 MobiDBLite consensus disorder prediction 28 47 - -
Vifa6g02071 438 Gene3D Transferase(Phosphotransferase) domain 1 166 434 - -
Vifa6g02071 438 ProSiteProfiles Protein kinase domain profile. 168 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02071 438 SUPERFAMILY Protein kinase-like (PK-like) 152 427 IPR011009 -
Vifa6g02071 438 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02071 Vifa-Chr6 754709013 754712226 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02071 16 90 MAP Kinase Kinase Kinase AT4G08500 40.698 8.59e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vifa6g02071 Pkinase 8.1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02071 - K13414 gmx:100820552 577.785