Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02065 ATGAATTTCATCGGAGTACCACATCAAAATTATGCAATTTCACAAATGAGGACCATACGGCGCACTGTCTGTGTAACCGTTTCTCGCTCCGAACTAGAACTTCGCTTTGAACTTCGAGAGTTTCTCCGATGGAGCAGTATGAAAAGGTTGAGAAAATTGGAGAAGGAAGATGAGGGAGTTCCTAGCACTGCCATAAGAGAGATTTCTCTTTTGAAAGAAATGCAGCACCGGAACATTGTTAGGTTGCAGGATGTTGTGCATAGCGAGAAGCGATTGTATCTTGTTTTTGAGTACCTTGACTTAGATCTAAAGAAGCATATGGATTCATCTCCGGAATTTTCCAAAGATCAACGACAAGTAAAAATGTTCCTCTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCTCATAGAGTTCTTCACCGAGACCTGAAACCACAAAATTTGTTGATCGATCGCAGCTCTAATGCGCTAAAGCTTGCAGATTTTGGATTGGCCAGAGCATTTGGAATTCCTGTTAGGACATTTACACATGAGGTGGTGACACTATGGTACAGAGCTCCAGAAATACTGCTTGGGTCCCGTCATTATTCTACCCCAGTTGATGTTTGGTCAGTGGGATGCATATTTGCAGAGATGATAAATCAGCGACCACTTTTCCCTGGGGATTCTGAGATTGATGAACTGTTTAAAATATTCAGAATCACCGGTACACCAAATGAAGATACATGGCCTGGAGTGACTTCATTGCCTGATTTTAAATCAGCCTTTCCAAAGTGGCCATCTAAGGACCTAGCAACTCTAGTCCCAAATCTCGAGCCATCTGGTCTTGATCTGTTATCTAGTATGCTTCGCTTGGATCCCAGCAGAAGAATTACTGCCAGGGGCGCTCTTGAGCATGAATACTTCAAAGACATTAAATTTGTCCCCTGA 933 0.4244 MNFIGVPHQNYAISQMRTIRRTVCVTVSRSELELRFELREFLRWSSMKRLRKLEKEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFSKDQRQVKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRSSNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMINQRPLFPGDSEIDELFKIFRITGTPNEDTWPGVTSLPDFKSAFPKWPSKDLATLVPNLEPSGLDLLSSMLRLDPSRRITARGALEHEYFKDIKFVP 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02065 310 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Vifa6g02065 310 FunFam Cell division control protein 2 homolog 102 308 - -
Vifa6g02065 310 SMART serkin_6 36 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02065 310 ProSiteProfiles Protein kinase domain profile. 1 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02065 310 CDD STKc_CDK1_CdkB_like 47 303 - -
Vifa6g02065 310 Gene3D Phosphorylase Kinase; domain 1 42 100 - -
Vifa6g02065 310 SUPERFAMILY Protein kinase-like (PK-like) 48 306 IPR011009 -
Vifa6g02065 310 PANTHER CELL DIVISION PROTEIN KINASE 50 303 - -
Vifa6g02065 310 Pfam Protein kinase domain 47 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02065 310 Gene3D Transferase(Phosphotransferase) domain 1 102 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02065 Vifa-Chr6 753820473 753828281 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02065 46 310 Core Cell Cycle Gene Families AT3G48750 81.887 2.47e-165 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vifa6g02065 Pkinase 1.1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02065 K02206 - gmx:100127418 494.582