Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02054 ATGGCTACCACAATTTCACCAACAACATGCTTCATCTTTCTCCCTATAATAATTCTATCATCATTTTGTCCCATAACAACACTATGTGCCACAGTTCTAGAAGACCTCAAAAACTTACACAAACCACTAGATTTCAATACTACAATCATCAACAACTGCATCAGAAACCCATCTCTCAGATACTGCAATTCCTCTCCCATGATGGACCTTGATGAAATATTCAAACATACTATTGTTGCTAGTCATCTTTGCAATGAATCTAACAACCCAAATTGTGTTGAATCATTCCCCAAAATCGATCTTAGAAACCGACCAAACATTGCTCCTCTTTACTTGTCTTTCACTTTCTTTTGGAAATATTGTCCCTTGACTATTATGTCCATTGATTTCTCAAACAACTCTATAAAGGGTAGTTTTCCAAATGATGTTTTTTTCTGCACTCAGATTCAGTCTCTTGATTTGAGTATCAATGAATTCTCTGGTGAAATTCCAATTCAAAGTTTTTCTCCATTAACCAACCTCACTTTTCTTAACCTCTCTTATAACAGTTTCTCAGAGAGTGAAATTTCTGATTCACAGTTTTTCAAAAAGTTTAACTCTTCAAGTTTTCTTCATTCTGGTGCTCTCATTGATCACAAAAAGTTTACTATAAAAGCTATCATTTTATTGGTTGGTTTTCCTATTCTTGTCATTTTAATGGTGATTTTCTTAGGATGGCTTTGTTTTCAAAGACCTGATTATCTTCCAAGAATCCTTCAAAGAAGTGGGAGATTTACATTTACACCAGCAATTCTCAAGGCGGCGACTTTCGGTTTTTCCAACAAGAATTTGGTTGGTAAAAGTGAATTTGTTCACATATACAAAGGAGTGTTAAGAGATGGAACTAAAGTGAAAATTGAGATGTATTGGGATGATATATCAAGGGACAGTTATCATGAATTTGTTGAGGAATGTAAGATTTTGTCTGAGTTAAACCATAAGAATCTTGTTAAGGTTCTAGGGTGGTGTAAAGGGAGAAAATTTAGGGCTGTTATAACAGAATGGATAAGAGAAGAAAGTGTTGAAACGTGGCTTTTAGAGTCAGGTCCTTCATGGAATCATAGAGTGAAAGCTTTGATGGGAGTTGTTGAATGTATGTTGTATCTGCATGAGGAATGGCCTGAAGTTGATTATGATCTCAAGATAAGTAGTGTTTTGGTACATGATAGTCTTGAACCATTGATTTCAAGGTTTCAAGTTGGAGATAGAAACAATAGTCGAAAAAAGATATGCAAGTTTGGAATATTTCTGCTAGAGATGATACTAAACAAGAGGGTTCAAGATGATTTTGATGGAAATGATGATGGATTTATAAGCTACATGAGAACCCTTCATCCACCAGACATGCAAAAGATGATTGATGAGAGAATGGATGTTACTGAAACAGCTTTGCATCATGTTAAACAGGTTCTATCCTTGGGATTAATGTGTATAGACCAATCAAACAATGAGAAACTACCAAGCTTTGCACATATATACAATATTGTATCAAAGGCCTATAAGGATAGCCTTGTTTTACCATATCATAAAACAACTCATGGAGATAGAGTTAAGGGACACAAGCGCGTTCAGTTCAAATAA 1620 0.3494 MATTISPTTCFIFLPIIILSSFCPITTLCATVLEDLKNLHKPLDFNTTIINNCIRNPSLRYCNSSPMMDLDEIFKHTIVASHLCNESNNPNCVESFPKIDLRNRPNIAPLYLSFTFFWKYCPLTIMSIDFSNNSIKGSFPNDVFFCTQIQSLDLSINEFSGEIPIQSFSPLTNLTFLNLSYNSFSESEISDSQFFKKFNSSSFLHSGALIDHKKFTIKAIILLVGFPILVILMVIFLGWLCFQRPDYLPRILQRSGRFTFTPAILKAATFGFSNKNLVGKSEFVHIYKGVLRDGTKVKIEMYWDDISRDSYHEFVEECKILSELNHKNLVKVLGWCKGRKFRAVITEWIREESVETWLLESGPSWNHRVKALMGVVECMLYLHEEWPEVDYDLKISSVLVHDSLEPLISRFQVGDRNNSRKKICKFGIFLLEMILNKRVQDDFDGNDDGFISYMRTLHPPDMQKMIDERMDVTETALHHVKQVLSLGLMCIDQSNNEKLPSFAHIYNIVSKAYKDSLVLPYHKTTHGDRVKGHKRVQFK 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02054 539 SUPERFAMILY Protein kinase-like (PK-like) 254 508 IPR011009 -
Vifa6g02054 539 Gene3D Transferase(Phosphotransferase) domain 1 263 513 - -
Vifa6g02054 539 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 124 198 - -
Vifa6g02054 539 ProSiteProfiles Protein kinase domain profile. 272 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02054 539 Pfam Protein tyrosine and serine/threonine kinase 275 429 IPR001245 GO:0004672|GO:0006468
Vifa6g02054 539 Gene3D Ribonuclease Inhibitor 35 214 IPR032675 -
Vifa6g02054 539 SUPERFAMILY L domain-like 92 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02054 Vifa-Chr6 750816092 750818601 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02054 112 439 Receptor kinase-like Gene Family AT2G23950 26.087 2.88e-26 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa6g02054 PK_Tyr_Ser-Thr 5.8e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02054 - - gmx:100779045 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g02054 6 750816092 750818601 Vifa6g02054 6 750816092 750818601 ECH