Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02051 ATGGTGACATTCTCGGTCGGTGGATGCGACGACGGTGAAGGACCTAGCAACCCCAACCAGAAGCGCCGAAGGGTAGACGAAGGAGAAGAAACAGCATCTACAAGAGAAGAAGAAAATCAACAACCACAACAAGGCTTCGAAATGGAAAATCCCCCAATTGGAACCCTAGAAAACGACGCAAACGAAAGAACATCTGGATCCAGCGTAGAGCAAACTAAGGAATTGGGTAAGAACGTATCTGCCATCATTTCCGACCCTGATGTTCTCGATTGCTTCATTTGTTCGGAGCCGTTGACGATTCCTATATTCCAGTGTGAGAATGGGCATATTGCTTGCTCGAAATGTTGTGGGGAACTTAGGAACAAATGTCCCATGTGCTTAATGCCCATTGGGTACAATCGTTGCCGTGCTGTGGAGAAGTTGTTGGAATCGATTAAAATATCATGCCCGAATGCAAAATACGGCTGCAAAGATATGTTTAGTTGCAATTTGAAAACTAGCCATGAGAAGGAATGTATATACATACCATGTAAGTGTCCACATACAGGCTGCGACTTTCTTGCGTCATCGAAAGAGTTAGCTCTCCACTTCAGCCATAGACATGTAGGCTTTGGAATACAGTTCACATATGACAAATTTATATCTGTCTCGTTAAATACTCGCCAGAAAGAAATAGTTCTTGTAGATCAAAATGATGCAAGACTATTTATTGTTCACAATAACCTCGTGGATCTGGGAAATATTGTCCATGTTAGTTGCCTTGGCCCCAATTCGAAAATAGATATTCATTATGATGTCTTGGCTAGGTCTCAGGGGAGCACATTAATATTGCAATCTTCTATGAAGACCATTCAAGAGAACAATGGTTGTGCTCCTACAACTAACTTTCTTTTGATTCCTTCGGATCATTTTGGTTTTGGACAACTCAAATTGGATATTCGTATAAAGCCTCCTAAAACCATAGCTGAAGATTGA 975 0.4164 MVTFSVGGCDDGEGPSNPNQKRRRVDEGEETASTREEENQQPQQGFEMENPPIGTLENDANERTSGSSVEQTKELGKNVSAIISDPDVLDCFICSEPLTIPIFQCENGHIACSKCCGELRNKCPMCLMPIGYNRCRAVEKLLESIKISCPNAKYGCKDMFSCNLKTSHEKECIYIPCKCPHTGCDFLASSKELALHFSHRHVGFGIQFTYDKFISVSLNTRQKEIVLVDQNDARLFIVHNNLVDLGNIVHVSCLGPNSKIDIHYDVLARSQGSTLILQSSMKTIQENNGCAPTTNFLLIPSDHFGFGQLKLDIRIKPPKTIAED 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02051 324 CDD RING-HC_SIAHs 89 126 - -
Vifa6g02051 324 MobiDBLite consensus disorder prediction 57 72 - -
Vifa6g02051 324 Pfam Seven in absentia protein family 134 210 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vifa6g02051 324 MobiDBLite consensus disorder prediction 16 36 - -
Vifa6g02051 324 SUPERFAMILY TRAF domain-like 144 315 - -
Vifa6g02051 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 197 IPR013083 -
Vifa6g02051 324 ProSiteProfiles Zinc finger SIAH-type profile. 144 202 IPR013010 GO:0008270
Vifa6g02051 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 28 316 IPR044286 -
Vifa6g02051 324 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02051 Vifa-Chr6 749954303 749955629 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02051 87 202 C3H Transcription Factor Family AT2G41980 33.333 1.06e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02051 K04506 - gmx:100778869 388.267