Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02037 ATGGATTCAACAGTTTCAGGATTGTTAACAAACATGTTAGACAGACTAGTAACAACCGCTTTTCACAACATTTCAATGGCAAAAGGTCTTGACACAGACATAACCAATCTCCAAAATACTCTCACCATCATCAACGCCTTCATTCTCGATGCTGAAAACAAGCAAACTCAAAGCAACTCCATTTCTACCTGGCTTCACCAGCTCAAATATGTTTTACTAGATGCACGTGATATTCTTGATGAGATTGAATATGAATCTTTGAGGAACCAAGTTCTCAAAGCAAATGGAACTTTTACTACAAAGGTACAACGTTTTCTCTCACCCTCTAGTAATCCTCTTACATTTCGTGTTAAGATGGCTCATAAGATCAAACATGTTAATGATAGGATAGATGAGGTAGCTTCTCTTAGGATGAAATTGGGTCTTTTGGTATCAGAAAATCATCATGCAAGTGGTAGTGGAAGTGGAATTAATAGTACTAGAGTAAGGAGAGAGACTCATTCTTATGTTAGATCTTCTTATGTGATTGGTAGAGATGAAGAGAGAGAAAAGGTTATCAGTTTTTTGATGGCTCCGCCGTTAGGTAATGATGATGATGAGATTGATGTTATTCCTATTATTGGAATTGGAGGGTTGGGAAAAACAACACTTGCTCAATTGGTTTATAATGATGATCGGGTGATTGGGCTTTTCGATTTGCGTATGTGGGTGTTTGTTTCTGATGTTTTTGATGTTAAGAGCTTAGTGTTGGAGATTCTTAAAGCTATGCATGGGATGGAAATGGACGCTAATATGTATAGTTTTGATCAATTGCAAAATTTGCTTCGCGAAAGGTTATGGGGGAAGAAGTTTTTACTTGTTCTAGATGATGTTTGGAATGAGGATTATAGAGAGTGGCTTGAATTGAAGAAGCTTTTACTAGGGATGCATGATAATGAAGATGGTAAACTTGGTAATAAGATTATCACGACCACTCGCAGTGACAGGGTTGCTTCGATTATGGGGAATGCTTATAAGCACAACTTGAAGTATCTTCCGGAAGAAGATTGTTTAAGGCTTTTTGTTACGTGTGCATTTCCAGAAGGAGAGGGGGAACATCGCCCGAGGCTTGTGGAGATTGGGAAGGACATTGCCAGAAAGTGTAAAGGGTTGCCCCTAGCAGTGATAAGTTTAGGGTGTTTACTTTATTCGAAACCGAATGAAAGTGAGTGGAAGAAAGTAAGAGATAGTGAATTTTGGAAAGTGAACCCTGAAGATGATGATGGCCTTTTGGCTGCGTTGAAACTAAGCTATAATCACTTGTCCTCTGGTTTGAAGCAATGTTTTGCTTATTGTTCAGTTTTTCCTAAGGGTTATGAGTATACTAATTTGGAGCTGATTTCATTTTGGATGGCCCATGGACTACTGCAACCGAAAAATGAAGATGAAGAACCAGAAGATCTTGGGGAGTTTTATATTCAAGAGCTAGTTTCAAGGTCTTTCTTTGAATGTGCTTCTGAAGAACAACTGGTTATTGACGGTCTTATTTCCGAAGAGCTTGAACTTCTAGGCATCTCCTTTTTCAAAATGCATGATCTTGTTCACGACCTTGCCGTGTTCACAATGCAAAATGAAAGGGCAGTAGTAAAATTTAGTTCAACAAATATTAAAGAAAAAGTTCAGCATTTATCATTTTCAGATAGTGGTGGAGGAGTTCCTACATTTGGTAAAATGTCGAGTAACATCCGAACCATTGGATTCTGGCACAGGGGTCAAAAGGAACTTGCAATCACCGAATTGTTTTTCAAATGGATCTCTAACAGCAAGTTTAAGTACCTCAGAGTGTTGAATATTAAAGGTTCTAATTTTCAGTTCTTGCCGGATTGTTTCAACAAAATGAAGCATTTGAGGTATCTTGATCTAAGCTATTGCCAGAGGTTGGAAAAACTCCCAGATTCCATTTGCAAGCTTCAAAGTCTAGAGGTATTAAATCTCTCGAGATGTGTAGCACTTGCATACATTCCCCCAAAATTGAGGAACCTTGTCAGCCTTAGGATATTGTGGATTACAACACAAGTCACTGATTTGTCTTTCATAGGTATTGGAAACTTGAAATATCTACAAATTTTAATTCTGTGGAATTGTGATAGTTTGGTCTTCCTTCCACGCGATTTGAGGCACCTGACTTCTTTAAAGAAACTGACGATTGAGGCTTGCGTAGAGGTGATACGTTTTGATGGTGAAGAAGAAAAAGAAGAAGAAAATGAAAACTACACCTTGAAACTCGAGCGATTTTCAATTGACAAATTACCCAATTTGGCAGTATTACCTGGTTGGCTTAGAAAATGTGATAAAACTTTGAGGTACATGGGCCTTTCAGAGTGTTCGAGTCTAAGGGCATTGCCAGAATGGTTGGTAAATCTAACATCACTCGAGACGCTTCTAATTGCTGACTGTCGAAAGTTGACATTACCCCAGCATATGGATCGTCTTCAAAACCTTCAGAATTTAAAGATATATGGATGTCCTCAGCTAGTTGAGAGATGCAAACAAACTACAGGTAGTGATTGGTACAAGATAGCTCATATTCCAAATGTTGAACTTGGAAGCGATTAG 2595 0.3834 MDSTVSGLLTNMLDRLVTTAFHNISMAKGLDTDITNLQNTLTIINAFILDAENKQTQSNSISTWLHQLKYVLLDARDILDEIEYESLRNQVLKANGTFTTKVQRFLSPSSNPLTFRVKMAHKIKHVNDRIDEVASLRMKLGLLVSENHHASGSGSGINSTRVRRETHSYVRSSYVIGRDEEREKVISFLMAPPLGNDDDEIDVIPIIGIGGLGKTTLAQLVYNDDRVIGLFDLRMWVFVSDVFDVKSLVLEILKAMHGMEMDANMYSFDQLQNLLRERLWGKKFLLVLDDVWNEDYREWLELKKLLLGMHDNEDGKLGNKIITTTRSDRVASIMGNAYKHNLKYLPEEDCLRLFVTCAFPEGEGEHRPRLVEIGKDIARKCKGLPLAVISLGCLLYSKPNESEWKKVRDSEFWKVNPEDDDGLLAALKLSYNHLSSGLKQCFAYCSVFPKGYEYTNLELISFWMAHGLLQPKNEDEEPEDLGEFYIQELVSRSFFECASEEQLVIDGLISEELELLGISFFKMHDLVHDLAVFTMQNERAVVKFSSTNIKEKVQHLSFSDSGGGVPTFGKMSSNIRTIGFWHRGQKELAITELFFKWISNSKFKYLRVLNIKGSNFQFLPDCFNKMKHLRYLDLSYCQRLEKLPDSICKLQSLEVLNLSRCVALAYIPPKLRNLVSLRILWITTQVTDLSFIGIGNLKYLQILILWNCDSLVFLPRDLRHLTSLKKLTIEACVEVIRFDGEEEKEEENENYTLKLERFSIDKLPNLAVLPGWLRKCDKTLRYMGLSECSSLRALPEWLVNLTSLETLLIADCRKLTLPQHMDRLQNLQNLKIYGCPQLVERCKQTTGSDWYKIAHIPNVELGSD 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02037 864 Gene3D - 9 124 - -
Vifa6g02037 864 Gene3D - 159 340 IPR027417 -
Vifa6g02037 864 PANTHER DISEASE RESISTANCE PROTEIN RP 69 748 IPR044974 GO:0006952
Vifa6g02037 864 Coils Coil 741 761 - -
Vifa6g02037 864 Pfam NB-ARC domain 183 432 IPR002182 GO:0043531
Vifa6g02037 864 Pfam Rx N-terminal domain 9 97 IPR041118 -
Vifa6g02037 864 Gene3D Ribonuclease Inhibitor 547 853 IPR032675 -
Vifa6g02037 864 PRINTS Disease resistance protein signature 203 218 - -
Vifa6g02037 864 PRINTS Disease resistance protein signature 381 395 - -
Vifa6g02037 864 PRINTS Disease resistance protein signature 278 292 - -
Vifa6g02037 864 PRINTS Disease resistance protein signature 624 640 - -
Vifa6g02037 864 Pfam Leucine rich repeat 606 661 IPR001611 GO:0005515
Vifa6g02037 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 445 IPR027417 -
Vifa6g02037 864 Gene3D - 425 532 IPR036388 -
Vifa6g02037 864 SUPERFAMILY L domain-like 522 852 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02037 Vifa-Chr6 747637081 747639774 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02037 200 840 WRKY Transcription Factor Family AT5G45050 23.022 4.22e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02037 - - mtr:25493373 1427.92