Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02025 ATGGAAAAAGAGCCACTTCTTCCATATTTCAGCCCCAAAAAACGCCTTTCCCCATTGCCTTCTCATCTTTTTCCTTTACCAGAAAACGATGAAATCGTTCTTCCTGTTACCCCTTCTGAGTTCAAGGATCGTCTCATCTTTGGACCTTCATGTGCTTCACCAAGAGACCCTTCACCTTTGGCTGATGCCTTAACACTTTCACGGAATTCCCCAAAAAATTCTTCTTGTTCCTCTTCCCACGACTTTGCATCAGCAACATCCACACTTTGTGATTCATCATCACAACTCTCTCAACAACAACAATTATCCTCTTGGCTCATTGACCCTAATTATCCATGGAGGAAAACCAATTTGCATCGCTCCAAAACTGCACCGGCTATGGCCGTTATCAGTGATTTCAATCATCCAACTGTGAAAAGACCTCAATTTGGTAGCCAATCTATTGTTCATCAAGCTTTTATTCTTCTTGTTCTTTATTTGGCTTTAGGGGTTGTTATCTATTGGTTCAATCGTCATAGTTTTACAGCAACTGAGACTCACCCTATTGTAGATGCGTTGTATTTTTGTATAGTCACAATGTGCACAATAGGATATGGTGACATTACTCCTAATAGTACTGCAACCAAGATTTTCTCTATATTGTTTGTGTTAATTGGTTTTGGTTTTATTGATATATTGCTCAGTGGAATGGTTAGTTATGTTCTTGATTTGCAAGAGAATCATTTGTTAAGGGCAGTGAAGGGAAGGAGTGCGAAGGATGGGAGGTCGTATATAGTTGATGTGAAGAAAGGTAGGATGAGGATTAGGATGAAGGTGGCATTGGCATTGGGGGTTGTGGTACTTTGTATTGGAGTCGGTGTCGGGGTTATGCATTTTGTGGAAAGTCTTGGGTGGGTAGATTCCTTTTATCTTTCGGTTATGTCTGTCACAACGGTTGGGTATGGTGATCATGCTTTCAACACTATGCATGGTCGTATCTTTGCTGCAATTTGGTTGCTTGTGTCGACGCTTGCGGTTGCCCGAGCGTTCCTTTATTTGGCTGAGGCGAGAGTGGATAAACGGCATAGGAGGATGGCTAAGTGGATTCTTGGTCAGGACATGACTGTTGCCGAGTTTCTTGCTGCTGATATAGACAACAATGGATTTGTGAGTAAATCAGAATATGTTATATACAAGCTGAAGGAGATGGGGAAAGTGACAGAGAAGGACATCATGCTGATCAGTGAGAAATTTGATAGACTAGATACTGGCAACTTTGGAAAAATAACACTTGGTGATCTCATGGAGGGTCATAATGGATGA 1302 0.4147 MEKEPLLPYFSPKKRLSPLPSHLFPLPENDEIVLPVTPSEFKDRLIFGPSCASPRDPSPLADALTLSRNSPKNSSCSSSHDFASATSTLCDSSSQLSQQQQLSSWLIDPNYPWRKTNLHRSKTAPAMAVISDFNHPTVKRPQFGSQSIVHQAFILLVLYLALGVVIYWFNRHSFTATETHPIVDALYFCIVTMCTIGYGDITPNSTATKIFSILFVLIGFGFIDILLSGMVSYVLDLQENHLLRAVKGRSAKDGRSYIVDVKKGRMRIRMKVALALGVVVLCIGVGVGVMHFVESLGWVDSFYLSVMSVTTVGYGDHAFNTMHGRIFAAIWLLVSTLAVARAFLYLAEARVDKRHRRMAKWILGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKVTEKDIMLISEKFDRLDTGNFGKITLGDLMEGHNG 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02025 433 FunFam Two-pore potassium channel 5 137 247 - -
Vifa6g02025 433 PRINTS Two pore domain K+ channel signature 310 319 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vifa6g02025 433 PRINTS Two pore domain K+ channel signature 191 219 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vifa6g02025 433 SUPERFAMILY Voltage-gated potassium channels 145 234 - -
Vifa6g02025 433 Pfam Ion channel 278 347 IPR013099 -
Vifa6g02025 433 Pfam Ion channel 154 234 IPR013099 -
Vifa6g02025 433 Gene3D - 339 432 - -
Vifa6g02025 433 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 153 405 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vifa6g02025 433 FunFam Two-pore potassium channel 3 255 369 - -
Vifa6g02025 433 Gene3D - 146 246 - -
Vifa6g02025 433 MobiDBLite consensus disorder prediction 63 77 - -
Vifa6g02025 433 SUPERFAMILY Voltage-gated potassium channels 263 369 - -
Vifa6g02025 433 Gene3D - 277 338 - -
Vifa6g02025 433 SUPERFAMILY EF-hand 370 430 IPR011992 -
Vifa6g02025 433 MobiDBLite consensus disorder prediction 53 77 - -
Vifa6g02025 433 ProSitePatterns EF-hand calcium-binding domain. 376 388 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02025 Vifa-Chr6 743859884 743863903 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02025 4 433 Ion Channels AT4G18160 62.299 0.0 527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02025 K05389 - gmx:100804249 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g02025 6 743859884 743863903 Vifa6g02025 6 743859884 743863903 ECH