Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02021 ATGTCTGATGAACCTAGACAACCCTACTTCCAAAACTTCATGCTAGATCATCAAACAACAGATCAAGATCAAGGATCTAACAACATCATGAGTTTCACAGAATGTTTACAAGGAACTAACATGGATCACTACAATTCATCCCTTGCAAACTCTTTTGGAGTACTATCTCCTTCTTCATCAGAGGTTTTTTCATCTGTTGATCAAGGAAATCAACAAAAACCAGAAGTAGGTCCTGATCAAACCCTTGCTAACTCATCTGTCTCTAACTCCTCATCTTCTGAAGCCGGTGTAGCAGAAGAAGATTCAGGAAAACGAAAGAAAAATGGACTAGTTGTTAAAGAAGAACAAGGACAAGAAAACACTAAAAATGGGAACAACAAGGTTGATAAGAAGAAAGGAGAGAAGAAACAGAAGGAACCAAGGTTTGCTTTCATGACAAAGAGTGAAGTTGATCAGCTAGAAGATGGATATAGATGGAGAAAATATGGACAGAAAGCTGTTAAGAATAGTCCATACCCTAGGAGCTATTATAGGTGTACAACACAGAAGTGTACAGTGAAAAAACGCGTAGAAAGATCATATGAAGACCCAACAACTGTGATAACAACATATGAAGGTCAGCATAATCATCCTGTCCCCACTTCTCTTAGAGGCAATGCGGCTTCAATGTTCACACCTTCTTTGCTATCTGCACCTACCCCTTTTTCATATGGATCTAACTTCCCTCAAGATTTTCTTCTCCATATGCACCACCATCATAACAACACCTTCAATATCACTTCTCAACCAACTAGTACTAATTCTGCTTCTCTTGTTGCTGCTTCCATTTATTCACACAACAACAATCTTAACAACTCTCTTCTTCATCACTATCAACAACAACTTGTTCCTGATCAATATGGATTGCTTCAAGATATTGTTCCTTCCATGTTCCTCAACACAACCAACCATAACTGA 957 0.3835 MSDEPRQPYFQNFMLDHQTTDQDQGSNNIMSFTECLQGTNMDHYNSSLANSFGVLSPSSSEVFSSVDQGNQQKPEVGPDQTLANSSVSNSSSSEAGVAEEDSGKRKKNGLVVKEEQGQENTKNGNNKVDKKKGEKKQKEPRFAFMTKSEVDQLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSYEDPTTVITTYEGQHNHPVPTSLRGNAASMFTPSLLSAPTPFSYGSNFPQDFLLHMHHHHNNTFNITSQPTSTNSASLVAASIYSHNNNLNNSLLHHYQQQLVPDQYGLLQDIVPSMFLNTTNHN 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02021 318 MobiDBLite consensus disorder prediction 124 143 - -
Vifa6g02021 318 SUPERFAMILY WRKY DNA-binding domain 145 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa6g02021 318 MobiDBLite consensus disorder prediction 56 143 - -
Vifa6g02021 318 SMART WRKY_cls 153 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g02021 318 FunFam WRKY transcription factor 57 139 213 - -
Vifa6g02021 318 Gene3D WRKY domain 137 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa6g02021 318 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 60 259 IPR044810 GO:0003700
Vifa6g02021 318 ProSiteProfiles WRKY domain profile. 148 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g02021 318 MobiDBLite consensus disorder prediction 98 113 - -
Vifa6g02021 318 Pfam WRKY DNA -binding domain 154 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g02021 318 MobiDBLite consensus disorder prediction 56 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02021 Vifa-Chr6 742327144 742328756 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02021 31 312 WRKY Transcription Factor Family AT4G18170 46.333 1.67e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa6g02021 WRKY 1.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02021 - - cam:101497541 347.436