Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02010 ATGTTGGAAATGGCACAAGCGATTGATGTTTCAAACAATAATCTTTCAGGTTTCCTTCCGAAGACACTCGTCGGGTGCAGAAACATGTTCAGTCTTGATTTCTCAGGAAACAATATTTCAGGTCCTATTCCTGCTGAAGTTTTCAGTGGCATGGACTTGCTTCAAACCTTAAATCTTTCAAGAAATCATTTTGATGGTGAAATCCCTGAAAGCCTGTCGCAGCTTAAGAGTCTTAGTTTCATAGATCTTTCTCAGAATAACTTGAAGGGAACTATTCCTGCAGGCTTTGCCAATCTTTCCAACCTGATGCAGCTCAACTTTTCTTTCAATCAACTTGAAGGTCCTGTACCTTTGACCGGAATATTTTCACATATCAATGAATCTAGTATGGTAGGAAACCAGGCTCTCTGCGGCGCAAGATTCCTAAGGCCATGCAGAGAGAATGGTCATTCCCTATCCAAGAAGAGCATAGCTATCATTGCTGCACTTGGATCTCTTGCTGTACTTCTAGCTGTAGTGCTTCTGGTTTTATATCTCAACCGAGGCACCTTGTTTGGTAGTTCTATAAAGAGTGATGATAGTCACAAACCAGAGTGCAATACAGCGTTGGCTCTTACAAGATTTAGTCCAAAGGAGTTAGAAAATGCCACCGGTTGTTTCAGCTCAGACTACATCATTGGTGCTAGCAGTTTGAGCACTGTTTACAAGGGCCAATTCGGAGACGGTCAGATTGTAGCCATAAAAAGGTTGAATTTGCACCATTTCTCTTCAAATACCGACAAGATCTTCAAGAGAGAAGCCAGCATCTTGTGCCAGCTGAGACATAGGAATTTGGTTAAGATACTTGGATATGCTTGGGAAAGTGGGAAAACAAAGGCTTTAGTTCTCGAGTACATGGAGAATGGGAACTTGGATAGCATCATACATGATAAAGAGGCAGATCAGTCGAGGTGGACATTATCTGAAAGAGTCCGAGTTTTCATTTCTATTGCGAGTGGATTGGATTACTTGCACTCAGCTCGTATACTCGGTCTTCATCTAGAAGACGGTAATGCCCTTTCCTCATCAACAGCTTTGCAAGGCACAGTTGGCTATTTGGCACCAGAATATGCCTACATAACGAAAGTTACGCCTAAAGTGGATGTGTTCAGCTTTGGTATCATAGTAATGGAATTTCTAACAAAAATGAGGCCAACAGGGCTCTCAGAATCAGTTAGTTTACACGACGTAGTGGCAAAAGCCGTTGCAAATGGAAAGGAGCAGCTTGTCTACATTGTGGACCCTGGATTGATCACGAAAGACAACGGGGAGGAGTTGGAAGAGCTCTTTAAGCTATCATTGTGCTGCACTCTCTCTGATCCTGAACGTCGGCCTAATATGAATGAAGTCTTATCTGCCCTCGTGAAGCTTAAGACGGCAAGATAG 1425 0.4274 MLEMAQAIDVSNNNLSGFLPKTLVGCRNMFSLDFSGNNISGPIPAEVFSGMDLLQTLNLSRNHFDGEIPESLSQLKSLSFIDLSQNNLKGTIPAGFANLSNLMQLNFSFNQLEGPVPLTGIFSHINESSMVGNQALCGARFLRPCRENGHSLSKKSIAIIAALGSLAVLLAVVLLVLYLNRGTLFGSSIKSDDSHKPECNTALALTRFSPKELENATGCFSSDYIIGASSLSTVYKGQFGDGQIVAIKRLNLHHFSSNTDKIFKREASILCQLRHRNLVKILGYAWESGKTKALVLEYMENGNLDSIIHDKEADQSRWTLSERVRVFISIASGLDYLHSARILGLHLEDGNALSSSTALQGTVGYLAPEYAYITKVTPKVDVFSFGIIVMEFLTKMRPTGLSESVSLHDVVAKAVANGKEQLVYIVDPGLITKDNGEELEELFKLSLCCTLSDPERRPNMNEVLSALVKLKTAR 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02010 474 PANTHER LEUCINE RICH REPEAT KINASE 2 5 471 - -
Vifa6g02010 474 FunFam Leucine-rich repeat receptor-like protein kinase 53 147 - -
Vifa6g02010 474 SUPERFAMILY L domain-like 7 137 - -
Vifa6g02010 474 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 186 298 - -
Vifa6g02010 474 Pfam Protein kinase domain 224 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02010 474 Pfam Leucine rich repeat 7 64 IPR001611 GO:0005515
Vifa6g02010 474 Gene3D Ribonuclease Inhibitor 1 153 IPR032675 -
Vifa6g02010 474 Gene3D Transferase(Phosphotransferase) domain 1 345 474 - -
Vifa6g02010 474 Gene3D Transferase(Phosphotransferase) domain 1 299 344 - -
Vifa6g02010 474 ProSiteProfiles Protein kinase domain profile. 220 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02010 474 SUPERFAMILY Protein kinase-like (PK-like) 197 469 IPR011009 -
Vifa6g02010 474 Gene3D Phosphorylase Kinase; domain 1 185 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02010 Vifa-Chr6 740480570 740482194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02010 2 471 Receptor kinase-like Gene Family AT5G46330 48.538 2.31e-142 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa6g02010 Pkinase 2.9e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02010 K13420 - gmx:100817960 626.706