Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02004 ATGCAGACTCACGAGTATTTCCATCGGGGAAAGATGGTACTTCCTTTGGCAGAAGAAGCCATTGGTACTTATATGAATGCTCCACCCCATACTTCTGCATTCAGTCCAGTTTTACCTCCAGGTGCGAGGCAGATAATGCCCTTTGAAAGGTTTAACTTGCATCCCTCTAAGGTTTGCCCCGAGAATTTTGTTGTCTTGGATCAAACAGATCAACAAAACAGGGTTTTGTTCAACCCTGCGATGACCTACAAGTTTAACAGTCCTGGCTTCAACTTCAACACTCATGCATATGCACAAGATTTTGAAAAAGACAAAATTAATCAAATGGAAAGGGAATTGTCATCTTCTTTTGAAGAGGACTCGAAGGACATTGATGCGTTGATGAGCCTAGACTCAGATGAGCTAGAAGATTACAATGAAGAAGAAGTTAGCACCGCAAGGACTCATGAAAAGGATGAAAGTACATCTGATACTTGCTCGAGCTATTGCATGAAATCAAGGAAGAAGAGATTGTTATCATCTTCTGTACAAACATCAGGCACCAAAGGTTACTGCAGCAGCAGTGAAAAGAAACAACACCTTGAGATGAAGAGGATGGTGAAAATATTGAGAAATATTGTGCCTGGCGGAGGCAACGAAATGGATACCGTCACCGTTTTGGACGAAGCTGTAAAATACCTCAAGTCTCTCAAGGTTGAAGTGGAGCAATTCGGAGTTGAACAATGA 726 0.4187 MQTHEYFHRGKMVLPLAEEAIGTYMNAPPHTSAFSPVLPPGARQIMPFERFNLHPSKVCPENFVVLDQTDQQNRVLFNPAMTYKFNSPGFNFNTHAYAQDFEKDKINQMERELSSSFEEDSKDIDALMSLDSDELEDYNEEEVSTARTHEKDESTSDTCSSYCMKSRKKRLLSSSVQTSGTKGYCSSSEKKQHLEMKRMVKILRNIVPGGGNEMDTVTVLDEAVKYLKSLKVEVEQFGVEQ 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02004 241 Gene3D - 186 239 IPR036638 GO:0046983
Vifa6g02004 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 180 230 IPR011598 GO:0046983
Vifa6g02004 241 MobiDBLite consensus disorder prediction 135 159 - -
Vifa6g02004 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 186 236 IPR036638 GO:0046983
Vifa6g02004 241 SMART finulus 186 236 IPR011598 GO:0046983
Vifa6g02004 241 PANTHER TRANSCRIPTION FACTOR BHLH145 31 240 IPR037546 -
Vifa6g02004 241 MobiDBLite consensus disorder prediction 141 156 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02004 32 239 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G29950 37.054 8.01e-34 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02004 - - mtr:11405720 369.777