Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02002 ATGGATCTAAGTAAGAAAACAAGAGGAAAACAAAAGCTTGTGATGAAGAAGATTGAGGGTATAGATGATATTTTCACTACATTTACAAAAAGAAAAACTGGTATTCACAACAAGGCCTCTGAATTATCAACACTTTGTGGGGCCAAAGTTGATATTCTTATGATTTCACCAAGAGGAAATCCATTCTGTTATGGTGAACCTTCTTCCAAATCACTGGCAAGAACAAGCTTGAAGGAAGAAACTCCATCGGTTGAAGATCAAATAAAGATACAAATGGTTGAACAACTGAACATGCAAAATGATCAATTAGTTGATGAAATCCATGTTGCAAAAGCTCAACGGGAAACATTGTCAGCATCAAATAGTTCAGGTTGGTGGGAGGTGAAATATAAAGGTCGATATGATCATGAGAAGGTTGAAAATATAAAGAATATCACGCAGAAAATGATAAATGAAGTTATAAGTAAGGGAGGAGAGATTGATTCTCATGCAAATTATTTCTTAGACAAATGGAATGGATTCGATTCAAATCCTAGTCTATTTGGGAGCAACAACAATTGTTATGAAATTGAAGCAATTGATGGATCCAAGCATTATGATCCAAAAGATAAAAGTAAGTCAGTTGTTTTTGATGGCGCAAGTGGGAGTGGAAGTGGGAGCTAG 663 0.3544 MDLSKKTRGKQKLVMKKIEGIDDIFTTFTKRKTGIHNKASELSTLCGAKVDILMISPRGNPFCYGEPSSKSLARTSLKEETPSVEDQIKIQMVEQLNMQNDQLVDEIHVAKAQRETLSASNSSGWWEVKYKGRYDHEKVENIKNITQKMINEVISKGGEIDSHANYFLDKWNGFDSNPSLFGSNNNCYEIEAIDGSKHYDPKDKSKSVVFDGASGSGSGS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02002 220 Coils Coil 93 113 - -
Vifa6g02002 220 SUPERFAMILY SRF-like 9 74 IPR036879 GO:0003677|GO:0046983
Vifa6g02002 220 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vifa6g02002 220 Gene3D - 25 88 IPR036879 GO:0003677|GO:0046983
Vifa6g02002 220 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vifa6g02002 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 64 IPR002100 GO:0003677|GO:0046983
Vifa6g02002 220 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vifa6g02002 220 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vifa6g02002 220 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vifa6g02002 220 PANTHER MADS BOX PROTEIN 10 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02002 Vifa-Chr6 737286415 737287287 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02002 5 158 Type I MADS-box Gene Family AT1G28460 34.132 1.64e-18 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa6g02002 SRF-TF 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02002 - K12412 ccaj:109813207 117.087