Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02000 ATGGCGAAAAAGGCTAAAGCTTCTTCACCCTCTGCTTCCGCCTCCACTTCCTCCGGCAAACTAGTGTTGAGGGGAATTAAGAGATCCGTGCGGCAGACTAAGTCAAGAGAGATAACCAAAGCAAAGCAAAGAAAGAACAAACATAAGATTGATGCTAAGAAGCCCAAGAAACCCCCCACTGCTTTCTTCTACTTCTTGGAGGATTTTCGGAAAGACTTTCAAGAGCAGAACCCAGATGTAAAGTCAATGCGTGATGTTGGCAAGGCATGTGGAGATAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTATGATATAGCAACGGAAAAACGTGCAGAATTTGATAGAGCAACAACAGAGTATAACAAGAAAATGGAAAGCGGTGATTATGAAGAAACTGATGAGGAGTCAGAGTATGACGAGTAA 432 0.4236 MAKKAKASSPSASASTSSGKLVLRGIKRSVRQTKSREITKAKQRKNKHKIDAKKPKKPPTAFFYFLEDFRKDFQEQNPDVKSMRDVGKACGDKWKTMTYEEKVQYYDIATEKRAEFDRATTEYNKKMESGDYEETDEESEYDE 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02000 143 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 27 140 IPR031061 -
Vifa6g02000 143 SUPERFAMILY HMG-box 41 133 IPR036910 -
Vifa6g02000 143 CDD HMG-box_AtHMGB1-like 56 116 - -
Vifa6g02000 143 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 55 124 IPR009071 -
Vifa6g02000 143 SMART hmgende2 54 125 IPR009071 -
Vifa6g02000 143 MobiDBLite consensus disorder prediction 8 22 - -
Vifa6g02000 143 MobiDBLite consensus disorder prediction 123 143 - -
Vifa6g02000 143 MobiDBLite consensus disorder prediction 40 54 - -
Vifa6g02000 143 Gene3D High mobility group box domain 38 140 IPR036910 -
Vifa6g02000 143 MobiDBLite consensus disorder prediction 1 56 - -
Vifa6g02000 143 Pfam HMG (high mobility group) box 55 124 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02000 Vifa-Chr6 736668900 736670940 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vifa6g02000 HMG_box 4.3e-17 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02000 - - mtr:25493401 184.111