Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01998 ATGGATCTTAGCGAAGAAGTTAGGCAAGCTCACAAGCGAGAGTTCGCCGATTTCCTGGACCAAGATATCGGAAAGAGCATTTACATGGACGCAATCAAAGCTCTAATCAACCACAAGCGCCGTCGTCTCATCGTCAACATCTCCGATCTCCACAACTACCAGGATTTGGGTAACAGGATTCTGAGAAATCCGAGTGAGTATATGCAGTCATTCTGTGATGCGGTGACTGATGCTGCTCGTGCTATTGATCCAAAGTATTTGAAGGAAGGGGAACAGGTTCTTGTGGGACTTGAAGGCCCTTTTGTTTCTCGCAGGGTTACTCCTAGGGATCTTCTTTCTGAATTCATAGGTTCTATGGTTTGTGTTGAGGGCATTATCACCAAATGTTCTCTTGTAAGGCCAAAGGTTGTTAAAAGTGTTCATTTCTGCCCAACCACTGGTAGCTTCACGCACCGTGATTATCGAGATATTACATCTAATTTGGGTTTGCCCACTGGGTCTGTGTATCCCACAAGGGATGAAAATGGCAACTTACTTGTGACTGAGTATGGGCTGTGCAAATACAAGGATCATCAAACTTTGTCCATGCAGGAAGTCCCTGAAAATTCTGCGCCTGGTCAGCTCCCAAGAACAGTGGATGTCATAGCAGAGGACGACCTTGTTGATTCTTGCAAGCCTGGGGATCGTGTGGCTGTTGTTGGGATATATAAGGCTCTTCCAGGAAAAAGCAAAGGCAGTGTTAATGGTGTATTCAGGACTGTGCTCATAGCCAACAATGTAGCTCTTCTCAATAAAGAAGCTAATGCTCCAATCTACAGCCCTGATGATCTTAAAGAGATAAAAAAGATAGCTGAAAGAGAGGATACATTTGACTTGCTTGGTAATTCACTTGCCCCTTCCATACATGGACATGCTTGGATAAAGAAAGCAGTGATTTTATTGATGCTTAGTGGAGTGGAGAAGAACTTAAAGAATGGCACTCATTTGAGAGGTGACATTAACATGATGATGGTTGGTGATCCCTCTGTTGCCAAGTCTCAACTTTTGAGAGCAATTATGAATATTGCCCCCTTGGCCATATCAACTACAGGTCGGGGTTCTTCTGGGGTTGGTTTGACAGCAGCCGTTACTTCAGATCAAGAAACAGGAGAGAGAAGGCTAGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGTGTTGTCTGCATTGATGAATTTGACAAAATGAATGACCAAGATCGTGTAGCTATACATGAAGTTATGGAACAGCAGACTGTAACTATTGCTAAGGCTGGGATCCATGCATCGCTTAATGCTCGTTGCAGTGTGGTGGCGGCTGCAAATCCCATATATGGAACTTATGATCGATCACTGACTCCAACTAAAAATATTGGACTCCCAGACTCCTTGCTTTCTCGATTTGATTTGTTGTTTATTGTGTTGGATCAAATGGATCCTGATATTGATCGCCAAATATCAGAGCATGTCCTGCGAATGCATCGATTTCGTTCTGCCATTGATGGAGGTGAGGCTGCACATGATGGGAGTGCAAGATATGGACGAGAAGAGGAAGCTGATACTGAGACATCTGTCTTTGTCAAATATAACAGAATGCTACATGGAAAGAAAACTGATAGAGGTCGCAAGCGCGATACACTTACAATTAAGTTTCTTAAAAAGTATATCCATTATGCCAAGCATAGGATTCAACCGGACTTGACTGATGAGGCATCTGACCAGATTGCCACAGCATATGCTGAGCTCAGAAATGCGAATTCTAGTGCAAAGACTGGAGGAACACTTCCTATAACTGCCAGAACTTTAGAAACCATAATACGTCTCTCAACTGCTCATGCCAAATTGAAGTTGAGCAGAAAGGTTACAAAGTCTGATGTGGATGCTGCTTTGAAGATTCTTAATTTTGCAATATATCATAAAGAGCTGACAGAAATGGATGAGCGTGAAGAAGAGCGGGAAAGAGAACAGGAGAGGAAGCGTAAGGCTGATGGTGAAAACAATGGTCCTGACCGTGGCTCTAAAAGCAGAAGAGACTCAACATCAGATGCCATGGAAGTAGATGATACCTCAGCAGCCCAACCAGCTGTTGGTCTCACTCCTGAAAGAATTGAAGCATTCAATTCCCTATTTGGTCAGCATATGCGTGCCAATCGCTTGGATCAAATATCTATTGCAGACATAGAAGATGTTATCAATAGAGGAGCTGGTTCCACTTACAGCTCGGCAGATATATTGCTCCTGTTAGAGAAATTGCAAGAAGACAATAGATTGATGATAGTTGATGGAATGGTGCATATGGTATCATAA 2322 0.4328 MDLSEEVRQAHKREFADFLDQDIGKSIYMDAIKALINHKRRRLIVNISDLHNYQDLGNRILRNPSEYMQSFCDAVTDAARAIDPKYLKEGEQVLVGLEGPFVSRRVTPRDLLSEFIGSMVCVEGIITKCSLVRPKVVKSVHFCPTTGSFTHRDYRDITSNLGLPTGSVYPTRDENGNLLVTEYGLCKYKDHQTLSMQEVPENSAPGQLPRTVDVIAEDDLVDSCKPGDRVAVVGIYKALPGKSKGSVNGVFRTVLIANNVALLNKEANAPIYSPDDLKEIKKIAEREDTFDLLGNSLAPSIHGHAWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRQISEHVLRMHRFRSAIDGGEAAHDGSARYGREEEADTETSVFVKYNRMLHGKKTDRGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASDQIATAYAELRNANSSAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVTKSDVDAALKILNFAIYHKELTEMDEREEEREREQERKRKADGENNGPDRGSKSRRDSTSDAMEVDDTSAAQPAVGLTPERIEAFNSLFGQHMRANRLDQISIADIEDVINRGAGSTYSSADILLLLEKLQEDNRLMIVDGMVHMVS 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01998 773 Coils Coil 643 672 - -
Vifa6g01998 773 Gene3D - 135 189 - -
Vifa6g01998 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 650 IPR027417 -
Vifa6g01998 773 FunFam DNA helicase 135 189 - -
Vifa6g01998 773 ProSiteProfiles MCM family domain profile. 289 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa6g01998 773 Pfam MCM N-terminal domain 12 83 IPR027925 -
Vifa6g01998 773 Gene3D - 271 664 IPR027417 -
Vifa6g01998 773 SUPERFAMILY Nucleic acid-binding proteins 13 259 IPR012340 -
Vifa6g01998 773 Pfam MCM P-loop domain 277 499 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa6g01998 773 Pfam MCM OB domain 109 239 IPR033762 -
Vifa6g01998 773 Gene3D - 3 99 - -
Vifa6g01998 773 ProSitePatterns MCM family signature. 398 406 IPR018525 GO:0003677|GO:0005524|GO:0006260
Vifa6g01998 773 MobiDBLite consensus disorder prediction 650 703 - -
Vifa6g01998 773 Pfam MCM AAA-lid domain 556 639 IPR041562 -
Vifa6g01998 773 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 8 680 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vifa6g01998 773 FunFam DNA helicase 5 104 - -
Vifa6g01998 773 SMART mcm 104 643 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vifa6g01998 773 CDD MCM3 292 641 - -
Vifa6g01998 773 Gene3D - 109 239 IPR012340 -
Vifa6g01998 773 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 491 501 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Vifa6g01998 773 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 630 645 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Vifa6g01998 773 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 207 219 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Vifa6g01998 773 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 458 468 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Vifa6g01998 773 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 181 195 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Vifa6g01998 773 MobiDBLite consensus disorder prediction 650 689 - -
Vifa6g01998 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 330 345 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa6g01998 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 442 454 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa6g01998 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 469 477 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa6g01998 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 418 431 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa6g01998 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 390 404 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa6g01998 773 SMART AAA_5 331 484 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01998 Vifa-Chr6 736620229 736625640 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01998 1 575 Core DNA Replication Machinery Family AT5G46280 81.976 0.0 971
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01998 K02541 - gmx:100811545 1321.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01998 6 736620229 736625640 Vifa6g01998 6 736620229 736625640 ECH