Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01983 ATGGTCGATGAAGAACCAATGCCTACTCGCTGGTCTTTCCAGGAGTTCAAAACGTATTATGATGTTAGGCTTGGTAGGAAGAAACTGGAGGAGAATGGTGAGACTGCTGATAAAGTGGTCAGTAATGGAAATTCTTCTGGTGTAGCATCTAATGGCAATTTTCATGTCAGAGTAACACCAGATAACGCTATTTATGAGCAGTTTCAAAGCCAGGGGAGGAATCCAGTGCATACAAATGGTTTTGCACCAAGCATTGTTAATGAAAAGCCGCCTAAGTCTTTGCTTCCACCTTTGGAATCTGCTGAAATGCGTACTTTAGCAGAGAGCTTAAGTAGGGATATTATTCGTGGGAACCCAAATGTGAAGTGGGAAAGCATCAAGGGGTTAGAGAATGCCAAACGTTTACTAAAAGAAGCTGTAGTGATGCCGATTAAATATCCCAAGTACTTTACTGGTCTGTTATCACCATGGAAGGGCATTCTTCTTTTTGGCCCCCCAGGGACAGGAAAGACAATGCTTGCTAAGGCAGTTGCAACAGAGTGCAATACTACATTTTTTAATATTTCTGCATCGTCTGTTGTCAGCAAATGGCGAGGTGATTCGGAGAAGTTAGTTAAGGTGTTATTTGAGCTTGCAAGGCATCATGCGCCCGCAACAATATTTCTTGACGAAATTGATGCAATCATTAGTCAGCGTGGTGAGGCACGTAGTGAACACGAAGCAAGTAGACGGTTAAAAACTGAACTACTCATTCAGATGGATGGTTTAACACGGACAGATGAACTTGTTTTTGTTTTGGCGGCAACTAATCTTCCCTGGGAATTGGATGCAGCCATGCTTAGACGTCTTGAGAAGCGAATCCTTGTACCACTTCCAGAACCAGAAGCAAGAAGATCAATGTTTGAGGAACTCCTTCCTCGGCAGCCTGACGAGGAACTGATCCCCTATGATTTACTCGTGGACCGGACAGAAGGTTATTCAGGCTCCGATATCCGCCTTCTTTGTAAAGAAACGGCAATGCAGCCATTGAGACGCTTAATGTCACAACTTGAACAGGAACAAGATGTGGTGCCGGAAGAAGAGTTGCCAAAAGTTGGGCCAGTCAGGCCTGAAGATGTCGAGGCAGCTTTAAGGAACACACGGCCATCTGCTCATCTCCTTGCCCACAAATACGACAAGTTTAATGCTGATTATGGTAGTCAAATACTTCAATGA 1215 0.4412 MVDEEPMPTRWSFQEFKTYYDVRLGRKKLEENGETADKVVSNGNSSGVASNGNFHVRVTPDNAIYEQFQSQGRNPVHTNGFAPSIVNEKPPKSLLPPLESAEMRTLAESLSRDIIRGNPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARRSMFEELLPRQPDEELIPYDLLVDRTEGYSGSDIRLLCKETAMQPLRRLMSQLEQEQDVVPEEELPKVGPVRPEDVEAALRNTRPSAHLLAHKYDKFNADYGSQILQ 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01983 404 CDD RecA-like_VPS4-like 126 289 - -
Vifa6g01983 404 Gene3D - 292 380 - -
Vifa6g01983 404 Pfam AAA+ lid domain 317 353 IPR041569 -
Vifa6g01983 404 FunFam Katanin p60 ATPase-containing subunit A-like 2 292 380 - -
Vifa6g01983 404 Gene3D - 119 394 IPR027417 -
Vifa6g01983 404 Pfam ATPase family associated with various cellular activities (AAA) 160 290 IPR003959 GO:0005524|GO:0016887
Vifa6g01983 404 PANTHER AAA DOMAIN-CONTAINING 47 400 - -
Vifa6g01983 404 SMART AAA_5 156 293 IPR003593 GO:0016887
Vifa6g01983 404 FunFam Katanin p60 ATPase-containing subunit A-like 2 119 303 - -
Vifa6g01983 404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 383 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01983 Vifa-Chr6 732804062 732815915 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01983 154 363 Calmodulin-binding Proteins AT3G56690 37.383 2.68e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01983 K07767 - gmx:100794098 676.781