Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01964 ATGGCGCCGAGTATTCAACTAACTTCCGCCGGCGCCGGTGAAGAATCCGACTCCGGTGACCTCGAAGATGTTCGCCTCCTAGACTCCTACGATAAACACGATGTCCACGACGAAACACGGCGGATTCAGGTTAGAATCACCGGCATGACCTGCGCCGCTTGTTCTAACTCCGTTGAGGCGGCTCTCAAGTCCGTCGACGGAGTAGTTGAGGCTTCCGTTGCTTTGCTTCAGAATAAAGCCGACGTCGTTTTTAACAGAAACCTCGCCAAGGATGAAGACATTAAGAATGCGATTGAAGATGCAGGTTTTGAAGCTGAGATCTTACATGAACCCGGTCCGACCGGGACGAAACCGGTTGGGGACAATACGGTGGTGGGACAGTTCACCATTGGTGGTATGACGTGTGCGGCCTGTGTGAATTCCGTTGAGGGAATTTTGAAGAACATCACCGGAGTCAAAAAAGCGGTGGTGGCTTTAGCTACTTCATTGGGTGAAGTTGAGTTTGATCCGAACGTGATTAGCAAAGAAGATATTGTTAGTGCAATTGAAGATGCTGGTTTTGAAGCTGCGTTTGTGCAGAGTTATAGTCAAGATGAGATTGTTTTAGGGGTTGTTGGAGCGTGTTCTTTGGTGGATGCTCGGGTTTTGGAAAGCATGCTTAGTGGTATGAAAGGGGTGAGGCAGTTTCGGTTTGATCCTTTGTTGAGTGAACTTAATGTTGTTTTTGATCCTCAAGTTCTCAATTCTAGATCAGTGGTAGATGGGATCCGTGTATTTAGTAATGGAAAATTTAAGTTGCATGTTAGAAGCCCTTATGCGAGAATGGCTTCTAAAGATGTCTCAGAGAGTTCAACTATGTTCCGACTTTTTATTTCCAGCTTGCTTCTTAGTATTCCTCTTTTCTTCATGGGGGTAATTTGTCCTCATATCCCATTCATATACTCCTTATTACTTTGGAGATGTGGGCCCTTCCTCATGGATGATTGGTTGAAGTGGGCATTGGTGAGTGTCATCCAATTTGTGATTGGAAAGCGCTTCTACATAGCAGCTATCAGAGCTCTTAGAAATGGTTCAACAAACATGGATGTCCTGGTTGCTTTGGGAACTACAGCATCATATGTTTATTCTGTTTGTGCTCTTCTGTATGGTGCTCTTACTGGATTTTGGTCTACAACATACTTTGAAACAAGTGCTATGCTTATAACATTTGTATTGTTGGGCAAGTATTTGGAATGTCTTGCCAAGGGAAAGACATCTGATGCCATTAAGAAGTTAGTAGAACTCACTCCTCCAACAGCTTTATTGGTTGTTAAAGACAAAGATGGTAGATCTATTGAAGAAAGAGAAATAGATTCCTTGCTCATCCAGCCTAGTGACACATTAAAAGTTCTCCCTGGTACAAAGATTCCTGCTGATGGTATTGTTTCCTGGGGCTCAAGTTATGTGAATGAGAGTATGGTGACTGGTGAATCTCTACCTGTTTTGAAGGAAATCAATGCATCTGTTATTGGAGCCCAGATGTCCAAAGCTCCCATTCAAAAGTTTGCTGATTATGTAGCAAGCATATTTGTTCCTACAATTGTAGCTCTATCAATATTGACACTATTGTGTTGGTATACTGCCGGGGCTCTTGGAGCTTACCCAGATGAATGGCTGCCAAAAAATGGAAATCACTTTGTTTTTGCCCTTATGTTTTCTATATCTGTTGTGGTGATTGCATGCCCATGTGCACTTGGTTTGGCAACACCAACTGCTGTCATGGTGGCCACAGGAGTTGGGGGCTAA 1785 0.4375 MAPSIQLTSAGAGEESDSGDLEDVRLLDSYDKHDVHDETRRIQVRITGMTCAACSNSVEAALKSVDGVVEASVALLQNKADVVFNRNLAKDEDIKNAIEDAGFEAEILHEPGPTGTKPVGDNTVVGQFTIGGMTCAACVNSVEGILKNITGVKKAVVALATSLGEVEFDPNVISKEDIVSAIEDAGFEAAFVQSYSQDEIVLGVVGACSLVDARVLESMLSGMKGVRQFRFDPLLSELNVVFDPQVLNSRSVVDGIRVFSNGKFKLHVRSPYARMASKDVSESSTMFRLFISSLLLSIPLFFMGVICPHIPFIYSLLLWRCGPFLMDDWLKWALVSVIQFVIGKRFYIAAIRALRNGSTNMDVLVALGTTASYVYSVCALLYGALTGFWSTTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELTPPTALLVVKDKDGRSIEEREIDSLLIQPSDTLKVLPGTKIPADGIVSWGSSYVNESMVTGESLPVLKEINASVIGAQMSKAPIQKFADYVASIFVPTIVALSILTLLCWYTAGALGAYPDEWLPKNGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGG 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01964 594 ProSiteProfiles Heavy-metal-associated domain profile. 124 190 IPR006121 GO:0046872
Vifa6g01964 594 SUPERFAMILY HMA, heavy metal-associated domain 36 111 IPR036163 GO:0046872
Vifa6g01964 594 ProSiteProfiles Heavy-metal-associated domain profile. 40 106 IPR006121 GO:0046872
Vifa6g01964 594 ProSitePatterns Heavy-metal-associated domain. 130 159 IPR017969 GO:0046872
Vifa6g01964 594 FunFam Copper-exporting P-type ATPase A 38 108 - -
Vifa6g01964 594 SUPERFAMILY Calcium ATPase, transmembrane domain M 380 589 IPR023298 -
Vifa6g01964 594 Pfam Heavy-metal-associated domain 44 104 IPR006121 GO:0046872
Vifa6g01964 594 Pfam Heavy-metal-associated domain 128 188 IPR006121 GO:0046872
Vifa6g01964 594 Gene3D - 39 110 - -
Vifa6g01964 594 Pfam E1-E2 ATPase 428 503 - -
Vifa6g01964 594 Pfam E1-E2 ATPase 495 591 - -
Vifa6g01964 594 Gene3D - 415 517 - -
Vifa6g01964 594 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 21 504 - -
Vifa6g01964 594 MobiDBLite consensus disorder prediction 1 21 - -
Vifa6g01964 594 SUPERFAMILY HMA, heavy metal-associated domain 120 193 IPR036163 GO:0046872
Vifa6g01964 594 FunFam Copper-exporting P-type ATPase A 122 192 - -
Vifa6g01964 594 SUPERFAMILY Calcium ATPase, transduction domain A 447 501 IPR008250 -
Vifa6g01964 594 Gene3D - 126 191 - -
Vifa6g01964 594 NCBIfam HAD-IC family P-type ATPase 400 590 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa6g01964 594 NCBIfam copper ion binding protein 42 105 IPR006122 GO:0005507
Vifa6g01964 594 NCBIfam copper ion binding protein 127 189 IPR006122 GO:0005507
Vifa6g01964 594 CDD HMA 43 106 IPR006121 GO:0046872
Vifa6g01964 594 ProSitePatterns Heavy-metal-associated domain. 46 76 IPR017969 GO:0046872
Vifa6g01964 594 PRINTS Copper-transporting ATPase 1 signature 67 90 - -
Vifa6g01964 594 PRINTS Copper-transporting ATPase 1 signature 96 116 - -
Vifa6g01964 594 PRINTS Copper-transporting ATPase 1 signature 41 66 - -
Vifa6g01964 594 CDD HMA 127 190 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01964 Vifa-Chr6 727571590 727575082 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01964 1 593 Primary Pumps ATPases AT5G44790 66.562 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01964 K17686 - gmx:100798164 947.192