Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01955 ATGGCTCAAAATCATTCTCATTCTCACTCTCAATCTCCTATACCATGTCATGATCATGAACAAGTAGCTGGTTTTGATTGGATGGTTCTATTGGCAGCTATCTTATGTGCTATTGTTTGTGCTCTTGGTCTGAATACTATGTTACAATGTGTTTTTCAATGTGTTGGTCGTGTACTTACAGAACCTATGCAATGGATTGCTTCTAAGAGGATGAATTCGGGAATCAAGAAAAAAGATATGGTAGCTTTGCCAACCTCAACATATAGTTCTCATGATTTAGGTTCTCCATCTTCAGCTTCTAGTTGTGTCATTTGTTTAGCTGAATTCTGTAATGGAGACCAAATAAGGTTCCTGCCAAAATGCAATCATCATTTCCATGTGGTTTGTATTGATAAGTGGTTGTTGTTACATTCTTCATGTCCTACTTGCAGGAATCTCACCCGAGTCTAG 450 0.38 MAQNHSHSHSQSPIPCHDHEQVAGFDWMVLLAAILCAIVCALGLNTMLQCVFQCVGRVLTEPMQWIASKRMNSGIKKKDMVALPTSTYSSHDLGSPSSASSCVICLAEFCNGDQIRFLPKCNHHFHVVCIDKWLLLHSSCPTCRNLTRV 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01955 149 SUPERFAMILY RING/U-box 101 146 - -
Vifa6g01955 149 PANTHER RING-H2 FINGER PROTEIN ATL78 16 145 IPR044602 GO:0016567|GO:0016740
Vifa6g01955 149 SMART ring_2 102 143 IPR001841 -
Vifa6g01955 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 148 IPR013083 -
Vifa6g01955 149 Pfam Ring finger domain 101 144 IPR001841 -
Vifa6g01955 149 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01955 Vifa-Chr6 725015915 725016364 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01955 9 149 C3H Transcription Factor Family AT1G20823 41.830 1.28e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01955 - - tpra:123918739 256.529