Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01945 ATGAGTTCATGTTCAGGAGACAAGCAAAACATGCATGAACAAACTGGTTGCTTTGATCCCAACACAATGGATGAAGGTATTCAAAATTCTCTTAAAGATAATAACTTTTCTCAAACTCACCCAAATCAAATGGTTGAAGGTAATCATAATCATTCTGAGGAGGATTTCTCTTATCATAATCATAATCCACAGCACCTTGATAACCATTTGGGGCAAGAGGTATATCAGAACAACTCAACTTGGGACCCTAATGTTCATGAGTTACAAGGTATGGATTATGCTAATCACCAACAACAACACCAACTACATGAACAACAGTTTCAACAAATTGTTGAGCCGCAAAACCATAACCAAACCTACAATCCGTCGAACATACTCGACCCTCATTACACTTCACCTGATCTTTTAAACCTTCTTCATTTGCCTAGATGCTCAGCATCATCTTTCCTCACAAACCCGAATCAAAAACCGCCAAATTTTCATAACTCAATGAGTTTTCTTGGAGATCTTCCGATGGGTTCATCGGACAATACAAGTGGACCATCAGTTTTGTATGATCCTCTATTTCCTTTGAACCTTCCTCCACAGCCACCGGCCCTCAGAGAGTTGTTTCAATCTCTGCCTCGCGGCTATAGTATGCCGACTAGCTCGAGGAACGGTTCTCTTTTCGGTGGAGGCGATGAGATGGAAGGAGATGGAGACATGGGAGTGCTGGAATTCAATAGGGTTGCTGCTAATGTTAGCAAAGGAAGAGGAGGAAAAGCTACAAAACATTTTGCAACAGAGAAACAAAGAAGAGAGCAATTGAATGGAAAGTACAAAATCTTGAGGGGTCTCATCCCAAATCCCACCAAGGTTGATAGAGCATCAGTGGTTGGAGATGCTATTGAGTACATAAGAGAGCTGATTAGAACAGTGAATGAGCTGAAACTATTGGTGGAGAAGAAAAGACATGGGAAGGAAATGTGTAAGACACTTAAAGCTGAAGATGCGGCTGCAGAAAGCTGTAACATAAAGCCTTTTGGTGATCCAAATGGAAGCATAAGGACTTCATGGCTGCAGAGGAAATCTAAAGACAGTGAGGTTGATGTCCGGATTGTCGACGACGATGTTACAATCAAACTGTTTCAGAGGAAGAAAGTTAATTGTTTACTGTATGTCTCCAAGGTTTTGGATGAACTTCAGCTGGAGCTTCGCCATGTTGCAGGTGGACATGTCGGTGAATATTGCAGTTTCTTGTTCAACAGCAAGGTAAGTGAAGGTTCATCAGTTTATGCAAGTGCTATAGCCAACAAGGTGATTGATGTTCTGGACACCCAATATGCTGCAGGAGTTCCATATCCAAGTAGACTGTAG 1356 0.4167 MSSCSGDKQNMHEQTGCFDPNTMDEGIQNSLKDNNFSQTHPNQMVEGNHNHSEEDFSYHNHNPQHLDNHLGQEVYQNNSTWDPNVHELQGMDYANHQQQHQLHEQQFQQIVEPQNHNQTYNPSNILDPHYTSPDLLNLLHLPRCSASSFLTNPNQKPPNFHNSMSFLGDLPMGSSDNTSGPSVLYDPLFPLNLPPQPPALRELFQSLPRGYSMPTSSRNGSLFGGGDEMEGDGDMGVLEFNRVAANVSKGRGGKATKHFATEKQRREQLNGKYKILRGLIPNPTKVDRASVVGDAIEYIRELIRTVNELKLLVEKKRHGKEMCKTLKAEDAAAESCNIKPFGDPNGSIRTSWLQRKSKDSEVDVRIVDDDVTIKLFQRKKVNCLLYVSKVLDELQLELRHVAGGHVGEYCSFLFNSKVSEGSSVYASAIANKVIDVLDTQYAAGVPYPSRL 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01945 451 PANTHER TRANSCRIPTION FACTOR BHLH91 9 443 IPR045895 GO:0006355|GO:0048658
Vifa6g01945 451 MobiDBLite consensus disorder prediction 47 62 - -
Vifa6g01945 451 Pfam Helix-loop-helix DNA-binding domain 256 302 IPR011598 GO:0046983
Vifa6g01945 451 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 253 302 IPR011598 GO:0046983
Vifa6g01945 451 SMART finulus 259 308 IPR011598 GO:0046983
Vifa6g01945 451 CDD bHLH_AtMYC1_like 258 327 IPR045896 -
Vifa6g01945 451 MobiDBLite consensus disorder prediction 1 46 - -
Vifa6g01945 451 MobiDBLite consensus disorder prediction 1 67 - -
Vifa6g01945 451 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 251 320 IPR036638 GO:0046983
Vifa6g01945 451 Gene3D - 251 328 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01945 Vifa-Chr6 722492175 722493744 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01945 16 446 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31220 38.095 3.78e-87 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa6g01945 HLH 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01945 - - gmx:100782512 589.341