Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01942 ATGGATTTTTCAAAGCTGCCTCCTGGTGGGTCTATCAATATCAATTTTGAACAATACAATGAAGAAGCTTCAAGTCAAAAGAATAAGAAACAAATTATTCAATCTTCTCACACTCAAGAGCAAGTAGCTAGATTTGAAGGAATGCCCCATCATTGTCCACATATTGAACAATTCAAGCATATGTTTCAAAAAAAACCAAATCAGATAAAGGAATTTATCCCAGCTGAAGAGACACAACAAGCTACTCAAAATTTGCAGCAACAAGATGAAGTGTTGCGTCAAGAGGAGAGAGTAACCAATGTTAGCAGAAGAGGAAGAGGAGGAGAAAGAGAAAGAAGGAAGAGAAAAAATCCAACAGCATCTTCACAAGGAAGTTCTAGAGAAAAAACCAATGACATTGTGATTCCTGCATTAGATATTTTCACTGTTGCTTCACACCTTGCTGCATGTTTTCAAAATAGTCATCTTGTTGAAAACCATATTGATGCTATATCTGCTCCAGATCAAGCCTTTCCTGTCAATGATCAAAACCAAAACCCTTTTGTTGTGACTCAGGAATCTCAACAAACTGAGACATCTCTTACTACTCATGTTGGAAATTCTTCCAATGATCAAAATTTACGTGCTATTACTACTACTACGACCACTACTACTACTGTTGCACAGGATCAAAATGTTGTAGCTTATGGTGATACATATCTTTATGATGATGATGTTGTTTTGTCTTGGTTGTTCCCAGAAGATGTTCCTAATTTGGATCATGCTCTTCGGGATACTTCTGTTCATGGTCTTGTTCGTGATCCTAATCAGGCTTCTGGTAATCACGTTGCTACCGTTGATAAGGATGTTGTTCCTGATCCTGATCTTGCTTCTGGTAATCACATTGGTACCGTTGATAAGGATGTTGTTCCTGATCCTAATCTTACTTCTGGTAATCACATTGCTACCGTTGATAAGGATGTTGTTCCTGATCCTAGTCTTGCTTCGGGTAATCGCATTGCCACCTTTGATGAGAATGCTGTTCCTGTTGCTGCTGATAAAGATATCGGTGCATCTCATATTGGAATTTTTGGTGGTTGTTTGCCTCATCCATTAAGCATAGCTATGGAAACTGAGAAGAATATGATTATGGGGATAGCTAATAATGCTTTGGAGGAGTTAACAAGGTTGATAAAATTGAATGAACCGTTCTGGTTTAGGTCGACCAAGACTGGCAGATTCGTTCTTCAACGCGAAACTTATGAGAAGATGTATAAAAAGAGCAGCGTCTTAAACGGACCTGATGCGCGTATTGAGGCCTCCAAGGAATCAATAGTTGTGAGCATGGCTGGTGCACAATTGGTTGACATGCTCCTTGATTCGAAAAAATGGACTGCTCTTTTCCCAACTATTGTTAAAACCGCGTATACTATAGAAGTATTTGAGGCCGGTTTGCCAGAAAGCCGCCATGGAGCTATGCAATTGATGCATGCAAAAATGCACATTCTGTCGCCATTGATTCCAACTCGACACACCTCATTCCTCCGCAGTTGTAAACAGATTGAAAAAGATGCATGGGTGATAGCTGATGTGTCATCACAGTCAATCCGATCTTTATTTGACGCATGTCTTCAAAATGTTTGGAAGTTTCCATCTGGATGCATGATTCAAGAACTTACCAATAACTCCTGCAGGGTAACTTGGGTGGAACATATACAAGTAGATGATAAGCGAACCGACACTTACTTCGAAAAACCAGTTCGTGGAAACAATGGATATAGAGCTGAAAGATGGCTTTTAACAATGGAAAGAATGTGTCAGAGGATTTCAACCTCTTTAGTTCCAAATACATCTACCACTGACATCACCATAGGAGGGAAAAGGATTGTAATGAAGCTCGCTGAACGAATGTTGAAAATCTTTTATGAAGCATTGGATATGGCTTCAAACACAGATTTTCCAAAGCTGAATACAATAGATAGCGATGGAGTTAGGGTTTGTGTTCGAAGGTGTACTGATCCAGGCACTGAAAATGGCATCATCCTCACTGCTTCTCTCACCTTTTGGCTCTCATGCTCCCCTGATCATGCCTTTGATTTCTTCAAAGATAGTAGTAGAAGATTTCAGTGGGATGTTCTATGCGAAGGCTATCCGGCGGAAGAGATTCACCGGATAACATACGGAACTAATCCAGGAAACTTCTCTTCAATTATCAAGACTTTGAACGTGGAAGATGAAAATATGAGAATTCTGCAAGAGTGTTATACACACTCTATGGAATCTGGTTTGGTTTATTGTCCGATTGATACAAACACAATGAATTGCGTGATAAGAGGGGAAGATTGTTCCATGCTGCCTCTTCTTCCGTCTGGTTTAACCATATCGGGGGATGGGCGGCCTTCCGATAACAATATGGGGAAAGAAGCCGGTAAATGGTACGAAGGTTCGATCGTAAGTTTAACTTATCAGATGCTGATCAGCAAAGACTCTAAGATGAGTAATCCGGACTTAAATGTGCTGAAGAAGATAAATAAGTTTGTTAACTCTGCGGTGAAAAAAATCAGAGATGCTTTGAGCTGCAGTGATTATTAG 2571 0.3991 MDFSKLPPGGSININFEQYNEEASSQKNKKQIIQSSHTQEQVARFEGMPHHCPHIEQFKHMFQKKPNQIKEFIPAEETQQATQNLQQQDEVLRQEERVTNVSRRGRGGERERRKRKNPTASSQGSSREKTNDIVIPALDIFTVASHLAACFQNSHLVENHIDAISAPDQAFPVNDQNQNPFVVTQESQQTETSLTTHVGNSSNDQNLRAITTTTTTTTTVAQDQNVVAYGDTYLYDDDVVLSWLFPEDVPNLDHALRDTSVHGLVRDPNQASGNHVATVDKDVVPDPDLASGNHIGTVDKDVVPDPNLTSGNHIATVDKDVVPDPSLASGNRIATFDENAVPVAADKDIGASHIGIFGGCLPHPLSIAMETEKNMIMGIANNALEELTRLIKLNEPFWFRSTKTGRFVLQRETYEKMYKKSSVLNGPDARIEASKESIVVSMAGAQLVDMLLDSKKWTALFPTIVKTAYTIEVFEAGLPESRHGAMQLMHAKMHILSPLIPTRHTSFLRSCKQIEKDAWVIADVSSQSIRSLFDACLQNVWKFPSGCMIQELTNNSCRVTWVEHIQVDDKRTDTYFEKPVRGNNGYRAERWLLTMERMCQRISTSLVPNTSTTDITIGGKRIVMKLAERMLKIFYEALDMASNTDFPKLNTIDSDGVRVCVRRCTDPGTENGIILTASLTFWLSCSPDHAFDFFKDSSRRFQWDVLCEGYPAEEIHRITYGTNPGNFSSIIKTLNVEDENMRILQECYTHSMESGLVYCPIDTNTMNCVIRGEDCSMLPLLPSGLTISGDGRPSDNNMGKEAGKWYEGSIVSLTYQMLISKDSKMSNPDLNVLKKINKFVNSAVKKIRDALSCSDY 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01942 856 Coils Coil 75 95 - -
Vifa6g01942 856 SMART START_1 378 601 IPR002913 GO:0008289
Vifa6g01942 856 CDD START_ArGLABRA2_like 373 600 - -
Vifa6g01942 856 Pfam START domain 380 601 IPR002913 GO:0008289
Vifa6g01942 856 ProSiteProfiles START domain profile. 369 604 IPR002913 GO:0008289
Vifa6g01942 856 MobiDBLite consensus disorder prediction 90 118 - -
Vifa6g01942 856 Gene3D - 379 570 IPR023393 -
Vifa6g01942 856 MobiDBLite consensus disorder prediction 76 130 - -
Vifa6g01942 856 SUPERFAMILY Bet v1-like 630 817 - -
Vifa6g01942 856 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 28 851 IPR042160 -
Vifa6g01942 856 SUPERFAMILY Bet v1-like 371 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01942 Vifa-Chr6 722043777 722048048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01942 363 853 Homeobox Transcription Factor Family AT1G17920 35.516 5.19e-96 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01942 K09338 - psat:127108302 1298.49