Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01940 ATGGACACCCTTTCACTCCTTTCCTACACTCTCTTCTATCTTGTTCTATTTTACACTCTTAACCTTCTCTTCAAATCAAGAAAATTCAAAAACCTTCCACCAGGCCCACTTTCTCTTCCCATAATTGGCAACCTCCACCACCTTAAACGTCCCCTCCACCACACTTTTAAAGGATTATCCAAAAATTACGGTGATGTCATTTCTCTTTGGTTTGGTTCACGTCTAGTTGTTGTTGTCTCTTCACCTTCTTTAGTCCAAGAATGTTTTACAAAAAACGATGTTGTCCTAGCAAATAGACCGCGTTTTCTCTCCGGAAAATATATCTTCTACAACTATACCACCTTAGGATCCTCACCCTATGGTGAACATTGGCGAAACCTTCGTCGCATCACTGCGACCGATGTTCTTTCAAACCACCGTATCAATAGCTCCTCTGAAATCCGTAGGGACGAGACTCGGAGACTTGTAAAAAAGTTAGCCGGTGATTCGTCTAAGGGTTTCATGGACGTTGAACTCAGGTCTAGATTCTTCGACATGACTTTCAATAACATAATGAGAATGATTTCGGGTAAAAGATACTATGGAGATGATTGTGATATGGCGGATGTGGAAGAAGCAAAGGAGTTTAGAGCCATGGTGTCTGATTTGTTGAAGTTGTCGGGTGCTAATAATAAGAATGATTTCTTGCCAATACTTAGGTTGATTGACTACGAAAATTTGGAGAAGAGGTTAAAGAAGATTAGTAGCAAAAATGATACGTTCTTGAGAGGACTCATTCAAGAACATCGAGACAAAAAGCAACATACAAATACTATGATAGATCATCTTTTAAGTTTGCAAGAATCACAACCTGAGTACTATACCGATCAAATCATCAAAGGTCTTGCTCAGGGTATGCTTCTTGCTGGAACAGACTCATCAGCTGTAACATTAGAGTGGGCATTATCCTGTGTATTGACCTATCCAGAGGTGCTAGAGAAGGCAAGACATGAACTGGAAACTCACGTAGGCCAAGACCGTTTGTTGGATGAAACCGATCTTCCGAAACTCCCTTACCTTAAAAACATAATCTACGAGACACTTCGGTTGTACACTCCTGCTCCATTGTCACTACCACACTCTTCTTCAGACAATTGTATTATAGGAGGATACAAAGTTCCGCGAGACACCATAGTGTTGATCAATGCTTGGGCCATTCATAGAGACCCTGAAACATGGAGCGAAGCGACGAGTTTCAAGCCGGAGAGGTTTGAGAGAGAAGGAGAGTTAGAGAAGTTGATTGCGTTTGGAATGGGGAGAAGGGCTTGTCCAGGTCAAGTGTTGGCTATGCGTGCAATAGGCTTGACTTTGGGTTTATTGATTCAGTGCTTTGAATGGAAAAAAGTGGGAGATAAAGAGATTGATATGAGTGAGGAAACTGGGTTCACTTTGTCTAGATCTGTTCCATTAAAGGCTATGTGCAAACCTCGTCCAGTTATCAAGAATCTTGTGAAGTAG 1497 0.4148 MDTLSLLSYTLFYLVLFYTLNLLFKSRKFKNLPPGPLSLPIIGNLHHLKRPLHHTFKGLSKNYGDVISLWFGSRLVVVVSSPSLVQECFTKNDVVLANRPRFLSGKYIFYNYTTLGSSPYGEHWRNLRRITATDVLSNHRINSSSEIRRDETRRLVKKLAGDSSKGFMDVELRSRFFDMTFNNIMRMISGKRYYGDDCDMADVEEAKEFRAMVSDLLKLSGANNKNDFLPILRLIDYENLEKRLKKISSKNDTFLRGLIQEHRDKKQHTNTMIDHLLSLQESQPEYYTDQIIKGLAQGMLLAGTDSSAVTLEWALSCVLTYPEVLEKARHELETHVGQDRLLDETDLPKLPYLKNIIYETLRLYTPAPLSLPHSSSDNCIIGGYKVPRDTIVLINAWAIHRDPETWSEATSFKPERFEREGELEKLIAFGMGRRACPGQVLAMRAIGLTLGLLIQCFEWKKVGDKEIDMSEETGFTLSRSVPLKAMCKPRPVIKNLVK 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01940 498 FunFam Cytochrome P450 family protein 24 493 - -
Vifa6g01940 498 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 429 438 IPR017972 GO:0005506|GO:0016705
Vifa6g01940 498 CDD CYP81 64 483 - -
Vifa6g01940 498 Pfam Cytochrome P450 33 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01940 498 PANTHER CYTOCHROME P450 82C3-RELATED 14 490 - -
Vifa6g01940 498 PRINTS P450 superfamily signature 436 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01940 498 PRINTS P450 superfamily signature 302 319 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01940 498 PRINTS P450 superfamily signature 355 366 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01940 498 PRINTS P450 superfamily signature 427 436 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01940 498 SUPERFAMILY Cytochrome P450 33 490 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01940 498 Gene3D Cytochrome P450 22 488 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01940 498 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01940 498 PRINTS E-class P450 group I signature 179 197 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01940 498 PRINTS E-class P450 group I signature 436 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01940 498 PRINTS E-class P450 group I signature 426 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01940 498 PRINTS E-class P450 group I signature 291 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01940 498 PRINTS E-class P450 group I signature 311 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01940 498 PRINTS E-class P450 group I signature 395 419 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01940 498 PRINTS E-class P450 group I signature 84 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01940 498 PRINTS E-class P450 group I signature 354 372 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01940 Vifa-Chr6 721277442 721279065 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01940 10 493 Cytochrome P450 AT4G37370 54.990 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01940 K13260 - gmx:100784650 780.785