Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01937 ATGAGGTTTTCAACACTTGTTGTAGTAGTTTTGTTCCTTGCGTGTTCAATTCTAGTACTTGGTCAAGAAAACTTAGATAAAGAAACAACTTTGAGAGTGCTTTTGGAAGTGAAAAAATCTTTTGTACAAGACCCAGAAAATGTTTTGATTGATTGGTCAGAAGAATACACAGATTACTGTAGTTGGAGAGGTGTTTCATGTGGTTTGAACTCGTTGGTTGATGACTCGGTGCATGTGGTGGGACTCAATCTTTCTTACTCGTCACTCACCGGGTCAGTTTCACCTGAACTCGGTCGTTTGAAAAACTTGATTTTTCTTGATCTTTCTTCCAATGGTCTCACGGGTCCTATTCCATTGAATCTGTCTAACCTCGTTTCATTGGAATCTCTGCTTCTGTTTTCTAATGAACTCAGTGGTTCTGTTCCCACTGAGTTTGGCTCGCTCACGAGTCTCCGAGTTTTGCGCATCGGTGACAATGCGTTAACCGGTATCATTCCGGCGTCTATCGGTAAATTGGTTAACTTGGTCGGTCTTGGTCTGGCTTCATGTGAGCTGACCGGGTCGATTCCACCAGAACTCGGGCAACTCAGTCTCTTGGAGAATCTTGTTCTGCAGGACAACGAGTTGATGGGTCCGATTCCGTCCGAGTTAGGAAACTGCTCAAGCCTCATAGCGTTTACTGCTGCTAACAACAAATTCAATGGCTCAATTCCGAGTGAACTGGGTCAACTCGAGAATCTACAAATTCTCAACCTTGGCAACAATAGTTTAACAGGGGAGATTCCGAGTCAACTCGGTGATTTGAGTGAACTCGTTTACCTCAATCTCATGGGGAACCAACTTGAAGGTGCAATTCCATCGTCTCTAGCTCAACTGGGTAACCTTCAAAAACTTGACTTGTCTATGAACAAACTCAGTGGAGGGATTCCAGAGGAGTTCGGTGACATGGGTCAGTTGAGTTTCATGGTTCTGTCTGGTAACAACCTTAATAGTGTCATACCAAGAACACTATGTTCCAATGCAACAAATTTGGAGCATTTGATGCTATCAGAAAGTGGACTCTATGGCGAAATTCCAGCTGAATTGAGTCAGTGTCAGTCACTGAAGCAACTTGACTTGTCGAACAATTCACTCAATGGTTCCATACCTCTTGAGATTTATGGGTTGGTGGAGTTAACTGATCTTTTGCTAAACAACAATAGCTTGGTTGGTTTCATCTCTCCATCCATAGGGAACTTGAACAACTTGCAGACACTTGCATTGTATCACAACAATTTGAAGGGTGGTCTTCCTAGAGAGATTGGAATGCTTGGGAAGTTGGAAATTTTATATCTTTATGATAATCAATTATCTGGGGCTATACCTATGGAGATCGGTAACTGTTCAAGCTTGCAAATGATTGATTTCTTTGGTAACAGATTCAACGAGGAAATTCCCATCACTATTGGAAAGCTGAAAGAGTTGAATTTCCTTCACCTCAGGCAAAATGAGCTTGGGGGTGAAATTCCTGCCAGTTTAGGTAACTGTCATAAACTGAAGATCATGAGTTTGGCTGACAATCGGCTCTCCGGTGCAATTCCTGCAACATTTGGATTCCTCAACTCATTGCAGCAGCTCATGCTCTACAACAATTCTCTTGAAGGTAACCTTTCTCACCAATTGATAAATGTAGCAAACTTGACTAGAGTGAATCTTTCAAAGAACAGACTGAATGGCAGTATAGCTGCGCTGTGCAGCTCTCAATCGTTTATTTCTTTCGATGTTACTGACAATGAGTTTGACGGTGAAATTCCTCCTCAATTGGGAAACTCACCTTCCCTAAAGAGGCTAAGTTTAGGTAACAACAAATTTTCTGGTGAGATTCCCAAGACTTTGGGAAAAATCCATGACCTATCAGTGTTAGACCTTTCAGGAAATTCGCTCAACGGACCAATACCTACCGAGCTTTCTTTGTGTAATAAACTGGCTTACATCGATTTAAACAGTAATCTTCTTAATGGACAAATACCATCATGGTTTGGAAAATTGCCTCAGTTGGGAGAGCTTAAGCTCTCTTCCAATAACTTTTCTGGACCTCTTCCATTAAGCCTATTCAAATGTTCCAAATTACTAGTTCTCTCTCTAAATGATAACTCTATCAATGGAAGCCTCCCAGCTGATATAGGCAACTTTACATATCTTAATGTCCTCCGACTTCACCGTAACGACTTCTCAGGACCGATTCCTCGCGAGATAGGTGAGTTGAGCAAGCTTTATGAGCTTCAACTCTCTAGGAATAGCTTTAACGGTGAGATGCCAAGTGAGATTGGAAAACTTCAAAATCTACAAGTCATTTTAGACCTCGGTTACAATAATCTCTCAGGTGGCATACCGCTTTCTCTAGGGACTATGTCGAAATTAGAAACACTTGATCTTTCTCACAATCAACTTACCGGTGAAATCCCTCCACAAGTTGGTGAAATGAGCAGCTTGGAAAAGCTCGATCTCTCTTACAACAACCTTCAAGGGAAATTGGACAAGAAATTCTCCCGGTGGCCAAATGTGGTATTTAAAGGAAACTTAAATCTTTGTGGAAGCCCTCTTGACCGCTGCAACAGTGATGATACTTCTGGCAGTAAGCCGTCGGGCCTAAGTGAGTCATCAGTAGCGATAATATCTGTCGTTTCAACTTTAGCTGCAATTACACTATTGATACTTTCAGTAAGAATCTTCTGCAAAAACAAGCAAGATTTTGCAAGGGAAGACAGCAAAGTGACTTCTTCTGTCTACTCTTCCTCTTCATCACAAGCACAGAGACGGCCACTTTTCCAGCTAAGAGCTGCTGGAAAGATGGATTTCAGGTGGGAAGATATCATGGATGCAACAAACAATCTAAATGATGATTTCATGATTGGTTCAGGAGGTTCAGGGAAAATCTACAAAGCTGAATTGGCCACTGGAGAGACTGTTGCTGTCAAGAAGATTTCGTCGAAAGATGGTTTTCTGCTAAACAAGAGCTTCTTAAGAGAAGTTAATACACTGGGAAGAATAAAGCATAGACATCTGGTGAAGCTAATAGGGTTCTGTAGCAATAGAAACAAAGGAGCGGGTTGGAATCTATTGATATACGAGTACATGGAGAATGGAAGTTTATGGGATTGGCTTCATGGAAAACCAGGCAACGTGAGCAAAGTAAGGAAGAGCCTCCTTGATTGGGAGACGAGGTTCAAAATTGCTGTGGGATTAGCTCAAGGAGTGGAGTACCTGCATCACGATTGTACACCGAAGATCATTCACAGAGATATCAAATCAAGCAACATATTGCTGGATTCCAAAATGGAGGCACACTTGGGAGATTTTGGACTGGCAAAAGCACTTATTGAAAGTGATGACTCTAACACTGAGTTAAATTCTTGTTTTGCTGGGTCTTATGGCTACATGGCTCCAGAGTATGCGTTCTCGCTGCATTCAACAGAAAAAAATGATGTTTTCAGCATGGGAATAGTTCTTATGGAACTTGTTAGTGGTAAAATGCCAACAAGTGAATTTTTTGGAGCTGATATGGACATGGTGAGATGGATAGAGATGCATATTAACATGCATGGCTCTACCTGTGAGAAACTGATAGACCCTGAACTGAAACCTCTTTTACCTAGTGAAGAATTTGCTGCATTTCAAGTGCTTGAGATAGCCTTGCAGTGCACTAAAGCTACACCGCAGGAAAGACCGCCTTCAAGGAAAGCATGTGATCTTCTCCTTCATGCATTCAATAACAGAATGATGGACTTTGGGAAGAAGAATCTGGATAATTACAAGTAA 3798 0.4163 MRFSTLVVVVLFLACSILVLGQENLDKETTLRVLLEVKKSFVQDPENVLIDWSEEYTDYCSWRGVSCGLNSLVDDSVHVVGLNLSYSSLTGSVSPELGRLKNLIFLDLSSNGLTGPIPLNLSNLVSLESLLLFSNELSGSVPTEFGSLTSLRVLRIGDNALTGIIPASIGKLVNLVGLGLASCELTGSIPPELGQLSLLENLVLQDNELMGPIPSELGNCSSLIAFTAANNKFNGSIPSELGQLENLQILNLGNNSLTGEIPSQLGDLSELVYLNLMGNQLEGAIPSSLAQLGNLQKLDLSMNKLSGGIPEEFGDMGQLSFMVLSGNNLNSVIPRTLCSNATNLEHLMLSESGLYGEIPAELSQCQSLKQLDLSNNSLNGSIPLEIYGLVELTDLLLNNNSLVGFISPSIGNLNNLQTLALYHNNLKGGLPREIGMLGKLEILYLYDNQLSGAIPMEIGNCSSLQMIDFFGNRFNEEIPITIGKLKELNFLHLRQNELGGEIPASLGNCHKLKIMSLADNRLSGAIPATFGFLNSLQQLMLYNNSLEGNLSHQLINVANLTRVNLSKNRLNGSIAALCSSQSFISFDVTDNEFDGEIPPQLGNSPSLKRLSLGNNKFSGEIPKTLGKIHDLSVLDLSGNSLNGPIPTELSLCNKLAYIDLNSNLLNGQIPSWFGKLPQLGELKLSSNNFSGPLPLSLFKCSKLLVLSLNDNSINGSLPADIGNFTYLNVLRLHRNDFSGPIPREIGELSKLYELQLSRNSFNGEMPSEIGKLQNLQVILDLGYNNLSGGIPLSLGTMSKLETLDLSHNQLTGEIPPQVGEMSSLEKLDLSYNNLQGKLDKKFSRWPNVVFKGNLNLCGSPLDRCNSDDTSGSKPSGLSESSVAIISVVSTLAAITLLILSVRIFCKNKQDFAREDSKVTSSVYSSSSSQAQRRPLFQLRAAGKMDFRWEDIMDATNNLNDDFMIGSGGSGKIYKAELATGETVAVKKISSKDGFLLNKSFLREVNTLGRIKHRHLVKLIGFCSNRNKGAGWNLLIYEYMENGSLWDWLHGKPGNVSKVRKSLLDWETRFKIAVGLAQGVEYLHHDCTPKIIHRDIKSSNILLDSKMEAHLGDFGLAKALIESDDSNTELNSCFAGSYGYMAPEYAFSLHSTEKNDVFSMGIVLMELVSGKMPTSEFFGADMDMVRWIEMHINMHGSTCEKLIDPELKPLLPSEEFAAFQVLEIALQCTKATPQERPPSRKACDLLLHAFNNRMMDFGKKNLDNYK 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01937 1265 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 576 868 - -
Vifa6g01937 1265 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 286 384 - -
Vifa6g01937 1265 ProSiteProfiles Leucine-rich repeat profile. 799 821 IPR001611 GO:0005515
Vifa6g01937 1265 ProSiteProfiles Protein kinase domain profile. 958 1250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01937 1265 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 500 1243 - -
Vifa6g01937 1265 Gene3D Ribonuclease Inhibitor 179 284 IPR032675 -
Vifa6g01937 1265 Gene3D Ribonuclease Inhibitor 285 385 IPR032675 -
Vifa6g01937 1265 Gene3D Ribonuclease Inhibitor 531 868 IPR032675 -
Vifa6g01937 1265 SUPERFAMILY L domain-like 579 844 - -
Vifa6g01937 1265 Gene3D Phosphorylase Kinase; domain 1 917 1038 - -
Vifa6g01937 1265 FunFam Leucine-rich repeat receptor-like protein kinase 1039 1262 - -
Vifa6g01937 1265 ProSitePatterns Protein kinases ATP-binding region signature. 964 987 IPR017441 GO:0005524
Vifa6g01937 1265 SUPERFAMILY L domain-like 53 335 - -
Vifa6g01937 1265 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 27 190 - -
Vifa6g01937 1265 Gene3D Ribonuclease Inhibitor 464 530 IPR032675 -
Vifa6g01937 1265 SMART serkin_6 958 1250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01937 1265 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 479 575 - -
Vifa6g01937 1265 Pfam Leucine rich repeat 270 329 IPR001611 GO:0005515
Vifa6g01937 1265 SUPERFAMILY L domain-like 338 642 - -
Vifa6g01937 1265 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 919 1038 - -
Vifa6g01937 1265 Gene3D Transferase(Phosphotransferase) domain 1 1039 1261 - -
Vifa6g01937 1265 Pfam Protein kinase domain 963 1241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01937 1265 Gene3D Ribonuclease Inhibitor 27 178 IPR032675 -
Vifa6g01937 1265 FunFam Uncharacterized protein 385 478 - -
Vifa6g01937 1265 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 191 285 - -
Vifa6g01937 1265 SUPERFAMILY Protein kinase-like (PK-like) 942 1245 IPR011009 -
Vifa6g01937 1265 Gene3D Ribonuclease Inhibitor 386 463 IPR032675 -
Vifa6g01937 1265 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Vifa6g01937 1265 SMART LRR_typ_2 196 220 IPR003591 -
Vifa6g01937 1265 SMART LRR_typ_2 244 268 IPR003591 -
Vifa6g01937 1265 SMART LRR_typ_2 797 819 IPR003591 -
Vifa6g01937 1265 SMART LRR_typ_2 292 315 IPR003591 -
Vifa6g01937 1265 SMART LRR_typ_2 748 772 IPR003591 -
Vifa6g01937 1265 SMART LRR_typ_2 389 413 IPR003591 -
Vifa6g01937 1265 SMART LRR_typ_2 821 852 IPR003591 -
Vifa6g01937 1265 SMART LRR_typ_2 316 340 IPR003591 -
Vifa6g01937 1265 SMART LRR_typ_2 148 171 IPR003591 -
Vifa6g01937 1265 SMART LRR_typ_2 485 509 IPR003591 -
Vifa6g01937 1265 SMART LRR_typ_2 124 147 IPR003591 -
Vifa6g01937 1265 SMART LRR_typ_2 437 461 IPR003591 -
Vifa6g01937 1265 SMART LRR_typ_2 676 700 IPR003591 -
Vifa6g01937 1265 Pfam Leucine rich repeat N-terminal domain 32 67 IPR013210 -
Vifa6g01937 1265 PRINTS Leucine-rich repeat signature 368 381 - -
Vifa6g01937 1265 PRINTS Leucine-rich repeat signature 797 810 - -
Vifa6g01937 1265 Pfam Leucine Rich repeats (2 copies) 799 837 IPR025875 -
Vifa6g01937 1265 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1090 1102 IPR008271 GO:0004672|GO:0006468
Vifa6g01937 1265 Pfam Leucine Rich Repeat 246 265 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01937 Vifa-Chr6 720919714 720923615 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01937 13 701 Receptor kinase-like Gene Family AT1G17750 36.481 7.57e-99 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa6g01937 Pkinase 2.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01937 - - gmx:100801889 1993.78